Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 75 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8flc:BA (2.76) BS01 rna ? GO:0002181 ... P30050 37410842
    2 8flc:L5 (2.76) BS01 rna ? GO:0000027 ... P62913 37410842
    3 8flc:L5 (2.76) BS02 rna ? GO:0000027 ... P62913 37410842
    4 8flc:L6 (2.76) BS01 rna ? GO:0001824 ... P26373 37410842
    5 8flc:L6 (2.76) BS02 rna ? GO:0001824 ... P26373 37410842
    6 8flc:L7 (2.76) BS01 rna ? GO:0002181 ... P40429 37410842
    7 8flc:L8 (2.76) BS01 rna ? GO:0002181 ... P50914 37410842
    8 8flc:L9 (2.76) BS01 rna ? GO:0002181 ... P61313 37410842
    9 8flc:L9 (2.76) BS02 rna ? GO:0002181 ... P61313 37410842
    10 8flc:LA (2.76) BS01 rna ? GO:0002181 ... P18621 37410842
    11 8flc:LA (2.76) BS02 rna ? GO:0002181 ... P18621 37410842
    12 8flc:LB (2.76) BS01 rna ? GO:0002181 ... Q07020 37410842
    13 8flc:LC (2.76) BS01 rna ? GO:0002181 ... Q02543 37410842
    14 8flc:LC (2.76) BS02 rna ? GO:0002181 ... Q02543 37410842
    15 8flc:LD (2.76) BS01 rna ? GO:0002181 ... P84098 37410842
    16 8flc:LE (2.76) BS01 rna ? GO:0002181 ... P46778 37410842
    17 8flc:LE (2.76) BS02 rna ? GO:0002181 ... P46778 37410842
    18 8flc:LF (2.76) BS01 rna ? GO:0002181 ... P35268 37410842
    19 8flc:LG (2.76) BS01 rna ? GO:0000122 ... P62829 37410842
    20 8flc:LH (2.76) BS01 rna ? GO:0000027 ... P62750 37410842
    21 8flc:LH (2.76) BS02 rna ? GO:0000027 ... P62750 37410842
    22 8flc:LI (2.76) BS01 rna ? GO:0002181 ... P61254 37410842
    23 8flc:LI (2.76) BS02 rna ? GO:0002181 ... P61254 37410842
    24 8flc:LJ (2.76) BS01 rna ? GO:0002181 ... P61353 37410842
    25 8flc:LK (2.76) BS01 rna ? GO:0002181 ... P46776 37410842
    26 8flc:LL (2.76) BS01 rna ? GO:0002181 ... P46779 37410842
    27 8flc:LM (2.76) BS01 rna ? GO:0002181 ... P47914 37410842
    28 8flc:LN (2.76) BS01 rna ? GO:0002181 ... P39023 37410842
    29 8flc:LO (2.76) BS01 rna ? GO:0002181 ... P62888 37410842
    30 8flc:LP (2.76) BS01 rna ? GO:0002181 ... P62899 37410842
    31 8flc:LQ (2.76) BS01 rna ? GO:0002181 ... P62910 37410842
    32 8flc:LQ (2.76) BS02 MG ? GO:0002181 ... P62910 37410842
    33 8flc:LR (2.76) BS01 rna ? GO:0002181 ... P49207 37410842
    34 8flc:LR (2.76) BS02 MG ? GO:0002181 ... P49207 37410842
    35 8flc:LR (2.76) BS03 ZN ? GO:0002181 ... P49207 37410842
    36 8flc:LS (2.76) BS01 rna ? GO:0000463 ... P42766 37410842
    37 8flc:LS (2.76) BS02 rna ? GO:0000463 ... P42766 37410842
    38 8flc:LT (2.76) BS01 rna ? GO:0000049 ... P18077 37410842
    39 8flc:LT (2.76) BS02 MG ? GO:0000049 ... P18077 37410842
    40 8flc:LU (2.76) BS01 rna ? GO:0002181 ... Q9Y3U8 37410842
    41 8flc:LV (2.76) BS01 rna ? GO:0002181 ... P83881 37410842
    42 8flc:LV (2.76) BS02 ZN ? GO:0002181 ... P83881 37410842
    43 8flc:LW (2.76) BS01 rna ? GO:0002181 ... P61927 37410842
    44 8flc:LW (2.76) BS02 rna ? GO:0002181 ... P61927 37410842
    45 8flc:LW (2.76) BS03 ZN ? GO:0002181 ... P61927 37410842
    46 8flc:LX (2.76) BS01 rna ? GO:0002181 ... P61513 37410842
    47 8flc:LX (2.76) BS02 ZN ? GO:0002181 ... P61513 37410842
    48 8flc:LY (2.76) BS01 rna ? GO:0001501 ... P63173 37410842
    49 8flc:LZ (2.76) BS01 rna ? GO:0002181 ... P62891 37410842
    50 8flc:LZ (2.76) BS02 rna ? GO:0002181 ... P62891 37410842
    51 8flc:NK (2.76) BS01 rna ? GO:0001099 ... Q9BRT6 37410842
    52 8flc:NP (2.76) BS01 rna ? GO:0003676 ... O00488 37410842
    53 8flc:NP (2.76) BS02 ZN ? GO:0003676 ... O00488 37410842
    54 8flc:NR (2.76) BS01 rna ? GO:0005515 ... Q96EY4 37410842
    55 8flc:NR (2.76) BS02 rna ? GO:0005515 ... Q96EY4 37410842
    56 8flc:SA (2.76) BS01 rna ? GO:0002181 ... P36578 37410842
    57 8flc:SA (2.76) BS02 rna ? GO:0002181 ... P36578 37410842
    58 8flc:SB (2.76) BS01 rna ? GO:0000027 ... P46777 37410842
    59 8flc:SB (2.76) BS02 rna ? GO:0000027 ... P46777 37410842
    60 8flc:SC (2.76) BS01 rna ? GO:0000027 ... Q02878 37410842
    61 8flc:SD (2.76) BS01 rna ? GO:0000463 ... P18124 37410842
    62 8flc:SD (2.76) BS02 rna ? GO:0000463 ... P18124 37410842
    63 8flc:SE (2.76) BS01 rna ? GO:0000470 ... P62424 37410842
    64 8flc:SE (2.76) BS02 rna ? GO:0000470 ... P62424 37410842
    65 8flc:SF (2.76) BS01 rna ? GO:0002181 ... P62917 37410842
    66 8flc:SF (2.76) BS02 MG ? GO:0002181 ... P62917 37410842
    67 8flc:SG (2.76) BS01 rna ? GO:0002181 ... P32969 37410842
    68 8flc:SK (2.76) BS01 rna ? GO:0000054 ... P56537 37410842
    69 8flc:SQ (2.76) BS01 rna ? GO:0000027 ... Q9UKD2 37410842
    70 8flc:SR (2.76) BS01 rna ? GO:0000079 ... Q9BZE4 37410842
    71 8flc:SR (2.76) BS02 rna ? GO:0000079 ... Q9BZE4 37410842
    72 8flc:SR (2.76) BS03 GDP ? GO:0000079 ... Q9BZE4 37410842
    73 8flc:SV (2.76) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    74 8flc:SV (2.76) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    75 8flc:VB (2.76) BS01 rna ? N/A Q9UNZ5 37410842
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417