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BioLiP
Download all results in tab-seperated text for 91 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8fl3:BA (2.53) BS01 rna ? GO:0002181 ... P30050 37410842
    2 8fl3:BB (2.53) BS01 rna ? GO:0002181 ... P62906 37410842
    3 8fl3:L5 (2.53) BS01 rna ? GO:0000027 ... P62913 37410842
    4 8fl3:L5 (2.53) BS02 rna ? GO:0000027 ... P62913 37410842
    5 8fl3:L6 (2.53) BS01 rna ? GO:0001824 ... P26373 37410842
    6 8fl3:L6 (2.53) BS02 rna ? GO:0001824 ... P26373 37410842
    7 8fl3:L6 (2.53) BS03 MG ? GO:0001824 ... P26373 37410842
    8 8fl3:L7 (2.53) BS01 rna ? GO:0002181 ... P40429 37410842
    9 8fl3:L8 (2.53) BS01 rna ? GO:0002181 ... P50914 37410842
    10 8fl3:L9 (2.53) BS01 rna ? GO:0002181 ... P61313 37410842
    11 8fl3:L9 (2.53) BS02 rna ? GO:0002181 ... P61313 37410842
    12 8fl3:L9 (2.53) BS03 MG ? GO:0002181 ... P61313 37410842
    13 8fl3:LA (2.53) BS01 rna ? GO:0002181 ... P18621 37410842
    14 8fl3:LA (2.53) BS02 rna ? GO:0002181 ... P18621 37410842
    15 8fl3:LB (2.53) BS01 rna ? GO:0002181 ... Q07020 37410842
    16 8fl3:LC (2.53) BS01 rna ? GO:0002181 ... Q02543 37410842
    17 8fl3:LC (2.53) BS02 rna ? GO:0002181 ... Q02543 37410842
    18 8fl3:LD (2.53) BS01 rna ? GO:0002181 ... P84098 37410842
    19 8fl3:LE (2.53) BS01 rna ? GO:0002181 ... P46778 37410842
    20 8fl3:LE (2.53) BS02 rna ? GO:0002181 ... P46778 37410842
    21 8fl3:LF (2.53) BS01 rna ? GO:0002181 ... P35268 37410842
    22 8fl3:LG (2.53) BS01 rna ? GO:0000122 ... P62829 37410842
    23 8fl3:LH (2.53) BS01 rna ? GO:0000027 ... P62750 37410842
    24 8fl3:LH (2.53) BS02 rna ? GO:0000027 ... P62750 37410842
    25 8fl3:LI (2.53) BS01 rna ? GO:0002181 ... P61254 37410842
    26 8fl3:LI (2.53) BS02 rna ? GO:0002181 ... P61254 37410842
    27 8fl3:LJ (2.53) BS01 rna ? GO:0002181 ... P61353 37410842
    28 8fl3:LK (2.53) BS01 rna ? GO:0002181 ... P46776 37410842
    29 8fl3:LL (2.53) BS01 rna ? GO:0002181 ... P46779 37410842
    30 8fl3:LN (2.53) BS01 rna ? GO:0002181 ... P39023 37410842
    31 8fl3:LO (2.53) BS01 rna ? GO:0002181 ... P62888 37410842
    32 8fl3:LP (2.53) BS01 rna ? GO:0002181 ... P62899 37410842
    33 8fl3:LQ (2.53) BS01 rna ? GO:0002181 ... P62910 37410842
    34 8fl3:LQ (2.53) BS02 MG ? GO:0002181 ... P62910 37410842
    35 8fl3:LR (2.53) BS01 rna ? GO:0002181 ... P49207 37410842
    36 8fl3:LR (2.53) BS02 MG ? GO:0002181 ... P49207 37410842
    37 8fl3:LR (2.53) BS03 ZN ? GO:0002181 ... P49207 37410842
    38 8fl3:LS (2.53) BS01 rna ? GO:0000463 ... P42766 37410842
    39 8fl3:LS (2.53) BS02 rna ? GO:0000463 ... P42766 37410842
    40 8fl3:LT (2.53) BS01 rna ? GO:0000049 ... P18077 37410842
    41 8fl3:LT (2.53) BS02 MG ? GO:0000049 ... P18077 37410842
    42 8fl3:LU (2.53) BS01 rna ? GO:0002181 ... Q9Y3U8 37410842
    43 8fl3:LW (2.53) BS01 rna ? GO:0002181 ... P61927 37410842
    44 8fl3:LW (2.53) BS02 rna ? GO:0002181 ... P61927 37410842
    45 8fl3:LW (2.53) BS03 ZN ? GO:0002181 ... P61927 37410842
    46 8fl3:LX (2.53) BS01 rna ? GO:0002181 ... P61513 37410842
    47 8fl3:LX (2.53) BS02 ZN ? GO:0002181 ... P61513 37410842
    48 8fl3:LY (2.53) BS01 rna ? GO:0001501 ... P63173 37410842
    49 8fl3:LZ (2.53) BS01 rna ? GO:0002181 ... P62891 37410842
    50 8fl3:LZ (2.53) BS02 rna ? GO:0002181 ... P62891 37410842
    51 8fl3:NB (2.53) BS01 rna ? GO:0003723 ... Q9BVP2 37410842
    52 8fl3:NB (2.53) BS02 rna ? GO:0003723 ... Q9BVP2 37410842
    53 8fl3:NC (2.53) BS01 rna ? GO:0003723 ... Q13823 37410842
    54 8fl3:NC (2.53) BS02 GTP ? GO:0003723 ... Q13823 37410842
    55 8fl3:NC (2.53) BS03 MG ? GO:0003723 ... Q13823 37410842
    56 8fl3:NF (2.53) BS01 rna ? GO:0000460 ... O95478 37410842
    57 8fl3:NJ (2.53) BS01 rna ? GO:0000027 ... Q9NVX2 37410842
    58 8fl3:NK (2.53) BS01 rna ? GO:0001099 ... Q9BRT6 37410842
    59 8fl3:NL (2.53) BS01 rna ? GO:0000027 ... Q9NZM5 37410842
    60 8fl3:NP (2.53) BS01 rna ? GO:0003676 ... O00488 37410842
    61 8fl3:NP (2.53) BS02 ZN ? GO:0003676 ... O00488 37410842
    62 8fl3:NT (2.53) BS01 rna ? GO:0000055 ... Q9NVU7 37410842
    63 8fl3:NU (2.53) BS01 peptide ? GO:0005515 ... Q9NXF1 37410842
    64 8fl3:NU (2.53) BS02 rna ? GO:0005515 ... Q9NXF1 37410842
    65 8fl3:NY (2.53) BS01 rna ? GO:0000791 ... Q8IZL8 37410842
    66 8fl3:NZ (2.53) BS01 rna ? GO:0003723 ... Q9H6F5 37410842
    67 8fl3:NZ (2.53) BS02 rna ? GO:0003723 ... Q9H6F5 37410842
    68 8fl3:SA (2.53) BS01 rna ? GO:0002181 ... P36578 37410842
    69 8fl3:SA (2.53) BS02 rna ? GO:0002181 ... P36578 37410842
    70 8fl3:SB (2.53) BS01 rna ? GO:0000027 ... P46777 37410842
    71 8fl3:SB (2.53) BS02 rna ? GO:0000027 ... P46777 37410842
    72 8fl3:SC (2.53) BS01 rna ? GO:0000027 ... Q02878 37410842
    73 8fl3:SD (2.53) BS01 rna ? GO:0000463 ... P18124 37410842
    74 8fl3:SD (2.53) BS02 rna ? GO:0000463 ... P18124 37410842
    75 8fl3:SE (2.53) BS01 rna ? GO:0000470 ... P62424 37410842
    76 8fl3:SE (2.53) BS02 rna ? GO:0000470 ... P62424 37410842
    77 8fl3:SF (2.53) BS01 rna ? GO:0002181 ... P62917 37410842
    78 8fl3:SF (2.53) BS02 MG ? GO:0002181 ... P62917 37410842
    79 8fl3:SG (2.53) BS01 rna ? GO:0002181 ... P32969 37410842
    80 8fl3:SI (2.53) BS01 rna ? GO:0000463 ... Q6DKI1 37410842
    81 8fl3:SI (2.53) BS02 rna ? GO:0000463 ... Q6DKI1 37410842
    82 8fl3:SK (2.53) BS01 rna ? GO:0000054 ... P56537 37410842
    83 8fl3:SM (2.53) BS01 rna ? GO:0000463 ... O00541 37410842
    84 8fl3:SM (2.53) BS02 rna ? GO:0000463 ... O00541 37410842
    85 8fl3:SQ (2.53) BS01 rna ? GO:0000027 ... Q9UKD2 37410842
    86 8fl3:SR (2.53) BS01 rna ? GO:0000079 ... Q9BZE4 37410842
    87 8fl3:SR (2.53) BS02 rna ? GO:0000079 ... Q9BZE4 37410842
    88 8fl3:SR (2.53) BS03 GDP ? GO:0000079 ... Q9BZE4 37410842
    89 8fl3:SR (2.53) BS04 MG ? GO:0000079 ... Q9BZE4 37410842
    90 8fl3:SV (2.53) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    91 8fl3:SV (2.53) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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