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BioLiP
Download all results in tab-seperated text for 69 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8fkz:BA (3.04) BS01 rna ? GO:0002181 ... P30050 37410842
    2 8fkz:L6 (3.04) BS01 rna ? GO:0001824 ... P26373 37410842
    3 8fkz:L6 (3.04) BS02 rna ? GO:0001824 ... P26373 37410842
    4 8fkz:L7 (3.04) BS01 rna ? GO:0002181 ... P40429 37410842
    5 8fkz:L8 (3.04) BS01 rna ? GO:0002181 ... P50914 37410842
    6 8fkz:L9 (3.04) BS01 rna ? GO:0002181 ... P61313 37410842
    7 8fkz:L9 (3.04) BS02 rna ? GO:0002181 ... P61313 37410842
    8 8fkz:L9 (3.04) BS03 MG ? GO:0002181 ... P61313 37410842
    9 8fkz:LA (3.04) BS01 rna ? GO:0002181 ... P18621 37410842
    10 8fkz:LA (3.04) BS02 rna ? GO:0002181 ... P18621 37410842
    11 8fkz:LB (3.04) BS01 rna ? GO:0002181 ... Q07020 37410842
    12 8fkz:LC (3.04) BS01 rna ? GO:0002181 ... Q02543 37410842
    13 8fkz:LD (3.04) BS01 rna ? GO:0002181 ... P84098 37410842
    14 8fkz:LE (3.04) BS01 rna ? GO:0002181 ... P46778 37410842
    15 8fkz:LF (3.04) BS01 rna ? GO:0002181 ... P35268 37410842
    16 8fkz:LG (3.04) BS01 rna ? GO:0000122 ... P62829 37410842
    17 8fkz:LH (3.04) BS01 rna ? GO:0000027 ... P62750 37410842
    18 8fkz:LH (3.04) BS02 rna ? GO:0000027 ... P62750 37410842
    19 8fkz:LI (3.04) BS01 rna ? GO:0002181 ... P61254 37410842
    20 8fkz:LI (3.04) BS02 rna ? GO:0002181 ... P61254 37410842
    21 8fkz:LJ (3.04) BS01 rna ? GO:0002181 ... P61353 37410842
    22 8fkz:LK (3.04) BS01 rna ? GO:0002181 ... P46776 37410842
    23 8fkz:LL (3.04) BS01 rna ? GO:0002181 ... P46779 37410842
    24 8fkz:LN (3.04) BS01 rna ? GO:0002181 ... P39023 37410842
    25 8fkz:LO (3.04) BS01 rna ? GO:0002181 ... P62888 37410842
    26 8fkz:LP (3.04) BS01 rna ? GO:0002181 ... P62899 37410842
    27 8fkz:LQ (3.04) BS01 rna ? GO:0002181 ... P62910 37410842
    28 8fkz:LR (3.04) BS01 rna ? GO:0002181 ... P49207 37410842
    29 8fkz:LR (3.04) BS02 ZN ? GO:0002181 ... P49207 37410842
    30 8fkz:LS (3.04) BS01 rna ? GO:0000463 ... P42766 37410842
    31 8fkz:LS (3.04) BS02 rna ? GO:0000463 ... P42766 37410842
    32 8fkz:LT (3.04) BS01 rna ? GO:0000049 ... P18077 37410842
    33 8fkz:LT (3.04) BS02 MG ? GO:0000049 ... P18077 37410842
    34 8fkz:LU (3.04) BS01 rna ? GO:0002181 ... Q9Y3U8 37410842
    35 8fkz:LW (3.04) BS01 rna ? GO:0002181 ... P61927 37410842
    36 8fkz:LW (3.04) BS02 rna ? GO:0002181 ... P61927 37410842
    37 8fkz:LW (3.04) BS03 ZN ? GO:0002181 ... P61927 37410842
    38 8fkz:LX (3.04) BS01 rna ? GO:0002181 ... P61513 37410842
    39 8fkz:LX (3.04) BS02 ZN ? GO:0002181 ... P61513 37410842
    40 8fkz:LY (3.04) BS01 rna ? GO:0001501 ... P63173 37410842
    41 8fkz:LZ (3.04) BS01 rna ? GO:0002181 ... P62891 37410842
    42 8fkz:LZ (3.04) BS02 rna ? GO:0002181 ... P62891 37410842
    43 8fkz:NB (3.04) BS01 rna ? GO:0003723 ... Q9BVP2 37410842
    44 8fkz:NC (3.04) BS01 rna ? GO:0003723 ... Q13823 37410842
    45 8fkz:NF (3.04) BS01 rna ? GO:0000460 ... O95478 37410842
    46 8fkz:NK (3.04) BS01 rna ? GO:0001099 ... Q9BRT6 37410842
    47 8fkz:NL (3.04) BS01 rna ? GO:0000027 ... Q9NZM5 37410842
    48 8fkz:SA (3.04) BS01 rna ? GO:0002181 ... P36578 37410842
    49 8fkz:SA (3.04) BS02 rna ? GO:0002181 ... P36578 37410842
    50 8fkz:SA (3.04) BS03 MG ? GO:0002181 ... P36578 37410842
    51 8fkz:SC (3.04) BS01 rna ? GO:0000027 ... Q02878 37410842
    52 8fkz:SD (3.04) BS01 rna ? GO:0000463 ... P18124 37410842
    53 8fkz:SE (3.04) BS01 rna ? GO:0000470 ... P62424 37410842
    54 8fkz:SE (3.04) BS02 rna ? GO:0000470 ... P62424 37410842
    55 8fkz:SF (3.04) BS01 rna ? GO:0002181 ... P62917 37410842
    56 8fkz:SG (3.04) BS01 rna ? GO:0002181 ... P32969 37410842
    57 8fkz:SH (3.04) BS01 rna ? GO:0000463 ... Q9BYG3 37410842
    58 8fkz:SI (3.04) BS01 rna ? GO:0000463 ... Q6DKI1 37410842
    59 8fkz:SI (3.04) BS02 rna ? GO:0000463 ... Q6DKI1 37410842
    60 8fkz:SL (3.04) BS01 rna ? GO:0000462 ... O76021 37410842
    61 8fkz:SM (3.04) BS01 rna ? GO:0000463 ... O00541 37410842
    62 8fkz:SM (3.04) BS02 rna ? GO:0000463 ... O00541 37410842
    63 8fkz:SQ (3.04) BS01 rna ? GO:0000027 ... Q9UKD2 37410842
    64 8fkz:SR (3.04) BS01 rna ? GO:0000079 ... Q9BZE4 37410842
    65 8fkz:SR (3.04) BS02 rna ? GO:0000079 ... Q9BZE4 37410842
    66 8fkz:SR (3.04) BS03 GDP ? GO:0000079 ... Q9BZE4 37410842
    67 8fkz:SR (3.04) BS04 MG ? GO:0000079 ... Q9BZE4 37410842
    68 8fkz:SV (3.04) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    69 8fkz:SV (3.04) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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