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BioLiP
Download all results in tab-seperated text for 71 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8fkt:BA (2.81) BS01 rna ? GO:0002181 ... P30050 37410842
    2 8fkt:L6 (2.81) BS01 rna ? GO:0001824 ... P26373 37410842
    3 8fkt:L6 (2.81) BS02 rna ? GO:0001824 ... P26373 37410842
    4 8fkt:L7 (2.81) BS01 rna ? GO:0002181 ... P40429 37410842
    5 8fkt:L8 (2.81) BS01 rna ? GO:0002181 ... P50914 37410842
    6 8fkt:L9 (2.81) BS01 rna ? GO:0002181 ... P61313 37410842
    7 8fkt:L9 (2.81) BS02 rna ? GO:0002181 ... P61313 37410842
    8 8fkt:LA (2.81) BS01 rna ? GO:0002181 ... P18621 37410842
    9 8fkt:LA (2.81) BS02 rna ? GO:0002181 ... P18621 37410842
    10 8fkt:LB (2.81) BS01 rna ? GO:0002181 ... Q07020 37410842
    11 8fkt:LC (2.81) BS01 rna ? GO:0002181 ... Q02543 37410842
    12 8fkt:LE (2.81) BS01 rna ? GO:0002181 ... P46778 37410842
    13 8fkt:LG (2.81) BS01 rna ? GO:0000122 ... P62829 37410842
    14 8fkt:LH (2.81) BS01 rna ? GO:0000027 ... P62750 37410842
    15 8fkt:LH (2.81) BS02 rna ? GO:0000027 ... P62750 37410842
    16 8fkt:LI (2.81) BS01 rna ? GO:0002181 ... P61254 37410842
    17 8fkt:LI (2.81) BS02 rna ? GO:0002181 ... P61254 37410842
    18 8fkt:LK (2.81) BS01 rna ? GO:0002181 ... P46776 37410842
    19 8fkt:LN (2.81) BS01 rna ? GO:0002181 ... P39023 37410842
    20 8fkt:LQ (2.81) BS01 rna ? GO:0002181 ... P62910 37410842
    21 8fkt:LQ (2.81) BS02 MG ? GO:0002181 ... P62910 37410842
    22 8fkt:LS (2.81) BS01 rna ? GO:0000463 ... P42766 37410842
    23 8fkt:LS (2.81) BS02 rna ? GO:0000463 ... P42766 37410842
    24 8fkt:LT (2.81) BS01 rna ? GO:0000049 ... P18077 37410842
    25 8fkt:LT (2.81) BS02 MG ? GO:0000049 ... P18077 37410842
    26 8fkt:LU (2.81) BS01 rna ? GO:0002181 ... Q9Y3U8 37410842
    27 8fkt:LW (2.81) BS01 rna ? GO:0002181 ... P61927 37410842
    28 8fkt:LW (2.81) BS02 rna ? GO:0002181 ... P61927 37410842
    29 8fkt:LW (2.81) BS03 ZN ? GO:0002181 ... P61927 37410842
    30 8fkt:NB (2.81) BS01 rna ? GO:0003723 ... Q9BVP2 37410842
    31 8fkt:NF (2.81) BS01 rna ? GO:0000460 ... O95478 37410842
    32 8fkt:NH (2.81) BS01 rna ? GO:0003723 ... Q9Y221 37410842
    33 8fkt:NI (2.81) BS01 rna 3.6.4.13 GO:0003676 ... Q8TDD1 37410842
    34 8fkt:NI (2.81) BS02 ADP 3.6.4.13 GO:0003676 ... Q8TDD1 37410842
    35 8fkt:NK (2.81) BS01 rna ? GO:0001099 ... Q9BRT6 37410842
    36 8fkt:NM (2.81) BS01 rna ? GO:0000460 ... Q9BXY0 37410842
    37 8fkt:NM (2.81) BS02 SF4 ? GO:0000460 ... Q9BXY0 37410842
    38 8fkt:NO (2.81) BS01 rna ? GO:0003723 ... P56182 37410842
    39 8fkt:NQ (2.81) BS01 rna ? GO:0000176 ... Q6RFH5 37410842
    40 8fkt:NS (2.81) BS01 rna ? GO:0000460 ... Q9H9Y2 37410842
    41 8fkt:NS (2.81) BS02 rna ? GO:0000460 ... Q9H9Y2 37410842
    42 8fkt:SA (2.81) BS01 rna ? GO:0002181 ... P36578 37410842
    43 8fkt:SA (2.81) BS02 rna ? GO:0002181 ... P36578 37410842
    44 8fkt:SC (2.81) BS01 rna ? GO:0000027 ... Q02878 37410842
    45 8fkt:SD (2.81) BS01 rna ? GO:0000463 ... P18124 37410842
    46 8fkt:SE (2.81) BS01 rna ? GO:0000470 ... P62424 37410842
    47 8fkt:SE (2.81) BS02 rna ? GO:0000470 ... P62424 37410842
    48 8fkt:SE (2.81) BS03 rna ? GO:0000470 ... P62424 37410842
    49 8fkt:SG (2.81) BS01 rna ? GO:0002181 ... P32969 37410842
    50 8fkt:SH (2.81) BS01 rna ? GO:0000463 ... Q9BYG3 37410842
    51 8fkt:SI (2.81) BS01 rna ? GO:0000463 ... Q6DKI1 37410842
    52 8fkt:SI (2.81) BS02 rna ? GO:0000463 ... Q6DKI1 37410842
    53 8fkt:SI (2.81) BS03 rna ? GO:0000463 ... Q6DKI1 37410842
    54 8fkt:SJ (2.81) BS01 rna 2.1.1.- GO:0000463 ... Q8IY81 37410842
    55 8fkt:SK (2.81) BS01 rna ? GO:0000054 ... P56537 37410842
    56 8fkt:SL (2.81) BS01 rna ? GO:0000462 ... O76021 37410842
    57 8fkt:SM (2.81) BS01 rna ? GO:0000463 ... O00541 37410842
    58 8fkt:SM (2.81) BS02 rna ? GO:0000463 ... O00541 37410842
    59 8fkt:SN (2.81) BS01 rna ? GO:0003723 ... Q99848 37410842
    60 8fkt:SO (2.81) BS01 rna ? GO:0000027 ... Q8TDN6 37410842
    61 8fkt:SQ (2.81) BS01 rna ? GO:0000027 ... Q9UKD2 37410842
    62 8fkt:SR (2.81) BS01 rna ? GO:0000079 ... Q9BZE4 37410842
    63 8fkt:SR (2.81) BS02 GDP ? GO:0000079 ... Q9BZE4 37410842
    64 8fkt:SS (2.81) BS01 rna ? GO:0000027 ... Q14137 37410842
    65 8fkt:ST (2.81) BS01 rna ? GO:0000027 ... Q15050 37410842
    66 8fkt:SV (2.81) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    67 8fkt:SV (2.81) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    68 8fkt:SW (2.81) BS01 rna 3.6.4.13 GO:0000463 ... Q9NVP1 37410842
    69 8fkt:SY (2.81) BS01 rna 2.1.1.- GO:0000027 ... P46087 37410842
    70 8fkt:SZ (2.81) BS01 rna ? GO:0003723 ... Q9Y3C1 37410842
    71 8fkt:SZ (2.81) BS02 rna ? GO:0003723 ... Q9Y3C1 37410842
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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