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BioLiP
Download all results in tab-seperated text for 104 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ewc:AA (2.45) BS01 rna ? GO:0002181 ... P0CX45 37595043
    2 8ewc:AA (2.45) BS02 MG ? GO:0002181 ... P0CX45 37595043
    3 8ewc:AB (2.45) BS01 rna ? GO:0000027 ... P14126 37595043
    4 8ewc:AB (2.45) BS02 MG ? GO:0000027 ... P14126 37595043
    5 8ewc:AC (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    6 8ewc:AC (2.45) BS02 rna ? GO:0003735 ... N/A 37595043
    7 8ewc:AD (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    8 8ewc:AD (2.45) BS02 rna ? GO:0003735 ... N/A 37595043
    9 8ewc:AE (2.45) BS01 rna ? GO:0000027 ... Q02326 37595043
    10 8ewc:AF (2.45) BS01 rna ? GO:0000463 ... P05737 37595043
    11 8ewc:AF (2.45) BS02 rna ? GO:0000463 ... P05737 37595043
    12 8ewc:AG (2.45) BS01 rna ? GO:0000470 ... P17076 37595043
    13 8ewc:AG (2.45) BS02 rna ? GO:0000470 ... P17076 37595043
    14 8ewc:AH (2.45) BS01 rna ? GO:0002181 ... P05738 37595043
    15 8ewc:AI (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    16 8ewc:AI (2.45) BS02 rna ? GO:0003735 ... N/A 37595043
    17 8ewc:AJ (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    18 8ewc:AJ (2.45) BS02 rna ? GO:0003735 ... N/A 37595043
    19 8ewc:AL (2.45) BS01 rna ? GO:0002181 ... Q12690 37595043
    20 8ewc:AL (2.45) BS02 rna ? GO:0002181 ... Q12690 37595043
    21 8ewc:AM (2.45) BS01 rna ? GO:0000027 ... P36105 37595043
    22 8ewc:AN (2.45) BS01 rna ? GO:0002181 ... P05748 37595043
    23 8ewc:AN (2.45) BS02 rna ? GO:0002181 ... P05748 37595043
    24 8ewc:AN (2.45) BS03 MG ? GO:0002181 ... P05748 37595043
    25 8ewc:AO (2.45) BS01 rna ? GO:0000470 ... P26784 37595043
    26 8ewc:AP (2.45) BS01 rna ? GO:0000448 ... P05740 37595043
    27 8ewc:AP (2.45) BS02 rna ? GO:0000448 ... P05740 37595043
    28 8ewc:AQ (2.45) BS01 rna ? GO:0002181 ... P0CX49 37595043
    29 8ewc:AR (2.45) BS01 rna ? GO:0002181 ... P0CX82 37595043
    30 8ewc:AR (2.45) BS02 rna ? GO:0002181 ... P0CX82 37595043
    31 8ewc:AS (2.45) BS01 rna ? GO:0003735 ... B3LMD0 37595043
    32 8ewc:AS (2.45) BS02 rna ? GO:0003735 ... B3LMD0 37595043
    33 8ewc:AT (2.45) BS01 rna ? GO:0002181 ... Q02753 37595043
    34 8ewc:AT (2.45) BS02 rna ? GO:0002181 ... Q02753 37595043
    35 8ewc:AU (2.45) BS01 rna ? GO:0002181 ... P05749 37595043
    36 8ewc:AV (2.45) BS01 rna ? GO:0002181 ... P0CX41 37595043
    37 8ewc:AV (2.45) BS02 rna ? GO:0002181 ... P0CX41 37595043
    38 8ewc:AW (2.45) BS01 rna ? N/A N/A 37595043
    39 8ewc:AX (2.45) BS01 rna ? GO:0000027 ... P04456 37595043
    40 8ewc:AX (2.45) BS02 rna ? GO:0000027 ... P04456 37595043
    41 8ewc:AY (2.45) BS01 rna ? GO:0002181 ... P05743 37595043
    42 8ewc:AY (2.45) BS02 rna ? GO:0002181 ... P05743 37595043
    43 8ewc:AZ (2.45) BS01 rna ? GO:0002181 ... P0C2H6 37595043
    44 8ewc:Aa (2.45) BS01 rna ? GO:0002181 ... P02406 37595043
    45 8ewc:Ab (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    46 8ewc:Ac (2.45) BS01 rna ? GO:0002181 ... P14120 37595043
    47 8ewc:Ad (2.45) BS01 rna ? GO:0002181 ... P0C2H8 37595043
    48 8ewc:Ae (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    49 8ewc:Ae (2.45) BS02 MG ? GO:0003735 ... N/A 37595043
    50 8ewc:Af (2.45) BS01 rna ? GO:0000027 ... P05744 37595043
    51 8ewc:Af (2.45) BS02 MG ? GO:0000027 ... P05744 37595043
    52 8ewc:Ag (2.45) BS01 rna ? GO:0002181 ... P87262 37595043
    53 8ewc:Ah (2.45) BS01 rna ? GO:0000463 ... P0CX84 37595043
    54 8ewc:Ah (2.45) BS02 rna ? GO:0000463 ... P0CX84 37595043
    55 8ewc:Ai (2.45) BS01 rna ? GO:0002181 ... P05745 37595043
    56 8ewc:Aj (2.45) BS01 rna ? GO:0000448 ... P49166 37595043
    57 8ewc:Aj (2.45) BS02 rna ? GO:0000448 ... P49166 37595043
    58 8ewc:Aj (2.45) BS03 MG ? GO:0000448 ... P49166 37595043
    59 8ewc:Ak (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    60 8ewc:Al (2.45) BS01 rna ? GO:0002181 ... P04650 37595043
    61 8ewc:Al (2.45) BS02 rna ? GO:0002181 ... P04650 37595043
    62 8ewc:Am (2.45) BS01 rna ? GO:0000027 ... P0CH08 37595043
    63 8ewc:Ao (2.45) BS01 rna ? GO:0002181 ... P0CX27 37595043
    64 8ewc:Ao (2.45) BS02 ZN ? GO:0002181 ... P0CX27 37595043
    65 8ewc:Ap (2.45) BS01 rna ? GO:0002181 ... P0CX25 37595043
    66 8ewc:BA (2.45) BS01 rna ? GO:0000028 ... P32905 37595043
    67 8ewc:BB (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    68 8ewc:BC (2.45) BS01 rna ? GO:0003723 ... N/A 37595043
    69 8ewc:BD (2.45) BS01 rna ? GO:0003723 ... N/A 37595043
    70 8ewc:BE (2.45) BS01 rna ? GO:0002181 ... P0CX35 37595043
    71 8ewc:BF (2.45) BS01 rna ? GO:0000028 ... A0A1L4AA68 37595043
    72 8ewc:BF (2.45) BS02 rna ? GO:0000028 ... A0A1L4AA68 37595043
    73 8ewc:BG (2.45) BS01 rna ? GO:0000462 ... P0CX37 37595043
    74 8ewc:BH (2.45) BS01 rna ? GO:0002181 ... P26786 37595043
    75 8ewc:BI (2.45) BS01 rna ? GO:0000462 ... P0CX39 37595043
    76 8ewc:BI (2.45) BS02 rna ? GO:0000462 ... P0CX39 37595043
    77 8ewc:BJ (2.45) BS01 rna ? GO:0000462 ... O13516 37595043
    78 8ewc:BK (2.45) BS01 rna ? GO:0000054 ... Q08745 37595043
    79 8ewc:BL (2.45) BS01 rna ? GO:0000028 ... P0CX47 37595043
    80 8ewc:BM (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    81 8ewc:BN (2.45) BS01 rna ? GO:0000462 ... P05756 37595043
    82 8ewc:BN (2.45) BS02 rna ? GO:0000462 ... P05756 37595043
    83 8ewc:BO (2.45) BS01 rna ? GO:0000028 ... P06367 37595043
    84 8ewc:BP (2.45) BS01 rna ? GO:0003723 ... N/A 37595043
    85 8ewc:BQ (2.45) BS01 rna ? GO:0000462 ... P0CX51 37595043
    86 8ewc:BR (2.45) BS01 rna ? GO:0000028 ... P02407 37595043
    87 8ewc:BS (2.45) BS01 rna ? GO:0000054 ... P0CX55 37595043
    88 8ewc:BT (2.45) BS01 rna ? GO:0000028 ... P07280 37595043
    89 8ewc:BU (2.45) BS01 rna ? GO:0003723 ... N/A 37595043
    90 8ewc:BV (2.45) BS01 rna ? GO:0000447 ... P0C0V8 37595043
    91 8ewc:BW (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    92 8ewc:BX (2.45) BS01 rna ? GO:0000462 ... P0CX29 37595043
    93 8ewc:BY (2.45) BS01 rna ? GO:0000462 ... P0CX31 37595043
    94 8ewc:BZ (2.45) BS01 rna ? N/A N/A 37595043
    95 8ewc:BZ (2.45) BS02 rna ? N/A N/A 37595043
    96 8ewc:Ba (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    97 8ewc:Bb (2.45) BS01 rna ? GO:0000028 ... P35997 37595043
    98 8ewc:Bc (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    99 8ewc:Bd (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    100 8ewc:Be (2.45) BS01 rna ? GO:0002181 ... P0CX33 37595043
    101 8ewc:Bf (2.45) BS01 rna ? GO:0003735 ... N/A 37595043
    102 8ewc:Bg (2.45) BS01 rna ? GO:0001965 ... P38011 37595043
    103 8ewc:E (2.45) BS01 rna ? GO:0003723 ... N/A 37595043
    104 8ewc:E (2.45) BS02 rna ? GO:0003723 ... N/A 37595043

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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