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BioLiP
Download all results in tab-seperated text for 103 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ewb:AA (2.87) BS01 rna ? GO:0002181 ... P0CX45 37595043
    2 8ewb:AA (2.87) BS02 rna ? GO:0002181 ... P0CX45 37595043
    3 8ewb:AB (2.87) BS01 rna ? GO:0000027 ... P14126 37595043
    4 8ewb:AC (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    5 8ewb:AC (2.87) BS02 rna ? GO:0003735 ... N/A 37595043
    6 8ewb:AD (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    7 8ewb:AD (2.87) BS02 rna ? GO:0003735 ... N/A 37595043
    8 8ewb:AE (2.87) BS01 rna ? GO:0000027 ... Q02326 37595043
    9 8ewb:AF (2.87) BS01 rna ? GO:0000463 ... P05737 37595043
    10 8ewb:AF (2.87) BS02 rna ? GO:0000463 ... P05737 37595043
    11 8ewb:AG (2.87) BS01 rna ? GO:0000470 ... P17076 37595043
    12 8ewb:AG (2.87) BS02 rna ? GO:0000470 ... P17076 37595043
    13 8ewb:AH (2.87) BS01 rna ? GO:0002181 ... P05738 37595043
    14 8ewb:AI (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    15 8ewb:AI (2.87) BS02 rna ? GO:0003735 ... N/A 37595043
    16 8ewb:AJ (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    17 8ewb:AJ (2.87) BS02 rna ? GO:0003735 ... N/A 37595043
    18 8ewb:AL (2.87) BS01 rna ? GO:0002181 ... Q12690 37595043
    19 8ewb:AL (2.87) BS02 rna ? GO:0002181 ... Q12690 37595043
    20 8ewb:AM (2.87) BS01 rna ? GO:0000027 ... P36105 37595043
    21 8ewb:AN (2.87) BS01 rna ? GO:0002181 ... P05748 37595043
    22 8ewb:AN (2.87) BS02 rna ? GO:0002181 ... P05748 37595043
    23 8ewb:AO (2.87) BS01 rna ? GO:0000470 ... P26784 37595043
    24 8ewb:AP (2.87) BS01 rna ? GO:0000448 ... P05740 37595043
    25 8ewb:AP (2.87) BS02 rna ? GO:0000448 ... P05740 37595043
    26 8ewb:AQ (2.87) BS01 rna ? GO:0002181 ... P0CX49 37595043
    27 8ewb:AR (2.87) BS01 rna ? GO:0002181 ... P0CX82 37595043
    28 8ewb:AR (2.87) BS02 rna ? GO:0002181 ... P0CX82 37595043
    29 8ewb:AS (2.87) BS01 rna ? GO:0003735 ... B3LMD0 37595043
    30 8ewb:AS (2.87) BS02 rna ? GO:0003735 ... B3LMD0 37595043
    31 8ewb:AT (2.87) BS01 rna ? GO:0002181 ... Q02753 37595043
    32 8ewb:AT (2.87) BS02 rna ? GO:0002181 ... Q02753 37595043
    33 8ewb:AU (2.87) BS01 rna ? GO:0002181 ... P05749 37595043
    34 8ewb:AV (2.87) BS01 rna ? GO:0002181 ... P0CX41 37595043
    35 8ewb:AV (2.87) BS02 rna ? GO:0002181 ... P0CX41 37595043
    36 8ewb:AW (2.87) BS01 rna ? N/A N/A 37595043
    37 8ewb:AX (2.87) BS01 rna ? GO:0000027 ... P04456 37595043
    38 8ewb:AX (2.87) BS02 rna ? GO:0000027 ... P04456 37595043
    39 8ewb:AY (2.87) BS01 rna ? GO:0002181 ... P05743 37595043
    40 8ewb:AY (2.87) BS02 rna ? GO:0002181 ... P05743 37595043
    41 8ewb:AZ (2.87) BS01 rna ? GO:0002181 ... P0C2H6 37595043
    42 8ewb:Aa (2.87) BS01 rna ? GO:0002181 ... P02406 37595043
    43 8ewb:Ab (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    44 8ewb:Ac (2.87) BS01 rna ? GO:0002181 ... P14120 37595043
    45 8ewb:Ad (2.87) BS01 rna ? GO:0002181 ... P0C2H8 37595043
    46 8ewb:Ae (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    47 8ewb:Af (2.87) BS01 rna ? GO:0000027 ... P05744 37595043
    48 8ewb:Ag (2.87) BS01 rna ? GO:0002181 ... P87262 37595043
    49 8ewb:Ah (2.87) BS01 rna ? GO:0000463 ... P0CX84 37595043
    50 8ewb:Ah (2.87) BS02 rna ? GO:0000463 ... P0CX84 37595043
    51 8ewb:Ai (2.87) BS01 rna ? GO:0002181 ... P05745 37595043
    52 8ewb:Aj (2.87) BS01 rna ? GO:0000448 ... P49166 37595043
    53 8ewb:Aj (2.87) BS02 rna ? GO:0000448 ... P49166 37595043
    54 8ewb:Ak (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    55 8ewb:Al (2.87) BS01 rna ? GO:0002181 ... P04650 37595043
    56 8ewb:Al (2.87) BS02 rna ? GO:0002181 ... P04650 37595043
    57 8ewb:Am (2.87) BS01 rna ? GO:0000027 ... P0CH08 37595043
    58 8ewb:Ao (2.87) BS01 rna ? GO:0002181 ... P0CX27 37595043
    59 8ewb:Ao (2.87) BS02 ZN ? GO:0002181 ... P0CX27 37595043
    60 8ewb:Ap (2.87) BS01 rna ? GO:0002181 ... P0CX25 37595043
    61 8ewb:BA (2.87) BS01 rna ? GO:0000028 ... P32905 37595043
    62 8ewb:BB (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    63 8ewb:BC (2.87) BS01 rna ? GO:0003723 ... N/A 37595043
    64 8ewb:BD (2.87) BS01 rna ? GO:0003723 ... N/A 37595043
    65 8ewb:BE (2.87) BS01 rna ? GO:0002181 ... P0CX35 37595043
    66 8ewb:BF (2.87) BS01 rna ? GO:0000028 ... A0A1L4AA68 37595043
    67 8ewb:BF (2.87) BS02 rna ? GO:0000028 ... A0A1L4AA68 37595043
    68 8ewb:BG (2.87) BS01 rna ? GO:0000462 ... P0CX37 37595043
    69 8ewb:BH (2.87) BS01 rna ? GO:0002181 ... P26786 37595043
    70 8ewb:BI (2.87) BS01 rna ? GO:0000462 ... P0CX39 37595043
    71 8ewb:BI (2.87) BS02 rna ? GO:0000462 ... P0CX39 37595043
    72 8ewb:BJ (2.87) BS01 rna ? GO:0000462 ... O13516 37595043
    73 8ewb:BK (2.87) BS01 rna ? GO:0000054 ... Q08745 37595043
    74 8ewb:BL (2.87) BS01 rna ? GO:0000028 ... P0CX47 37595043
    75 8ewb:BM (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    76 8ewb:BN (2.87) BS01 rna ? GO:0000462 ... P05756 37595043
    77 8ewb:BN (2.87) BS02 rna ? GO:0000462 ... P05756 37595043
    78 8ewb:BO (2.87) BS01 rna ? GO:0000028 ... P06367 37595043
    79 8ewb:BP (2.87) BS01 rna ? GO:0003723 ... N/A 37595043
    80 8ewb:BQ (2.87) BS01 rna ? GO:0000462 ... P0CX51 37595043
    81 8ewb:BR (2.87) BS01 rna ? GO:0000028 ... P02407 37595043
    82 8ewb:BS (2.87) BS01 rna ? GO:0000054 ... P0CX55 37595043
    83 8ewb:BT (2.87) BS01 rna ? GO:0000028 ... P07280 37595043
    84 8ewb:BU (2.87) BS01 rna ? GO:0003723 ... N/A 37595043
    85 8ewb:BV (2.87) BS01 rna ? GO:0000447 ... P0C0V8 37595043
    86 8ewb:BW (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    87 8ewb:BX (2.87) BS01 rna ? GO:0000462 ... P0CX29 37595043
    88 8ewb:BY (2.87) BS01 rna ? GO:0000462 ... P0CX31 37595043
    89 8ewb:BZ (2.87) BS01 rna ? N/A N/A 37595043
    90 8ewb:Ba (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    91 8ewb:Bb (2.87) BS01 rna ? GO:0000028 ... P35997 37595043
    92 8ewb:Bc (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    93 8ewb:Bd (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    94 8ewb:Be (2.87) BS01 rna ? GO:0002181 ... P0CX33 37595043
    95 8ewb:Bf (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    96 8ewb:Bg (2.87) BS01 rna ? GO:0001965 ... P38011 37595043
    97 8ewb:DC (2.87) BS01 rna 3.6.5.- GO:0003746 ... P32324 37595043
    98 8ewb:DC (2.87) BS02 rna 3.6.5.- GO:0003746 ... P32324 37595043
    99 8ewb:DC (2.87) BS03 rna 3.6.5.- GO:0003746 ... P32324 37595043
    100 8ewb:DC (2.87) BS04 GDP 3.6.5.- GO:0003746 ... P32324 37595043
    101 8ewb:E (2.87) BS01 rna ? GO:0003723 ... N/A 37595043
    102 8ewb:E (2.87) BS02 rna ? GO:0003723 ... N/A 37595043
    103 8ewb:V (2.87) BS01 rna ? GO:0000027 ... P05317 37595043
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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