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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 252 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8evr:AA (2.87) BS01 rna ? GO:0002181 ... P0CX45 37595043
    2 8evr:AB (2.87) BS01 rna ? GO:0000027 ... P14126 37595043
    3 8evr:AC (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    4 8evr:AC (2.87) BS02 rna ? GO:0003735 ... N/A 37595043
    5 8evr:AD (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    6 8evr:AD (2.87) BS02 rna ? GO:0003735 ... N/A 37595043
    7 8evr:AE (2.87) BS01 rna ? GO:0000027 ... Q02326 37595043
    8 8evr:AF (2.87) BS01 rna ? GO:0000463 ... P05737 37595043
    9 8evr:AF (2.87) BS02 rna ? GO:0000463 ... P05737 37595043
    10 8evr:AG (2.87) BS01 rna ? GO:0000470 ... P17076 37595043
    11 8evr:AG (2.87) BS02 rna ? GO:0000470 ... P17076 37595043
    12 8evr:AH (2.87) BS01 rna ? GO:0002181 ... P05738 37595043
    13 8evr:AI (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    14 8evr:AI (2.87) BS02 rna ? GO:0003735 ... N/A 37595043
    15 8evr:AJ (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    16 8evr:AJ (2.87) BS02 rna ? GO:0003735 ... N/A 37595043
    17 8evr:AL (2.87) BS01 rna ? GO:0002181 ... Q12690 37595043
    18 8evr:AL (2.87) BS02 rna ? GO:0002181 ... Q12690 37595043
    19 8evr:AM (2.87) BS01 rna ? GO:0000027 ... P36105 37595043
    20 8evr:AN (2.87) BS01 rna ? GO:0002181 ... P05748 37595043
    21 8evr:AN (2.87) BS02 rna ? GO:0002181 ... P05748 37595043
    22 8evr:AN (2.87) BS03 MG ? GO:0002181 ... P05748 37595043
    23 8evr:AO (2.87) BS01 rna ? GO:0000470 ... P26784 37595043
    24 8evr:AO (2.87) BS02 MG ? GO:0000470 ... P26784 37595043
    25 8evr:AP (2.87) BS01 rna ? GO:0000448 ... P05740 37595043
    26 8evr:AP (2.87) BS02 rna ? GO:0000448 ... P05740 37595043
    27 8evr:AQ (2.87) BS01 rna ? GO:0002181 ... P0CX49 37595043
    28 8evr:AR (2.87) BS01 rna ? GO:0002181 ... P0CX82 37595043
    29 8evr:AR (2.87) BS02 rna ? GO:0002181 ... P0CX82 37595043
    30 8evr:AS (2.87) BS01 rna ? GO:0003735 ... B3LMD0 37595043
    31 8evr:AS (2.87) BS02 rna ? GO:0003735 ... B3LMD0 37595043
    32 8evr:AT (2.87) BS01 rna ? GO:0002181 ... Q02753 37595043
    33 8evr:AT (2.87) BS02 rna ? GO:0002181 ... Q02753 37595043
    34 8evr:AT (2.87) BS03 MG ? GO:0002181 ... Q02753 37595043
    35 8evr:AU (2.87) BS01 rna ? GO:0002181 ... P05749 37595043
    36 8evr:AV (2.87) BS01 rna ? GO:0002181 ... P0CX41 37595043
    37 8evr:AW (2.87) BS01 rna ? N/A N/A 37595043
    38 8evr:AX (2.87) BS01 rna ? GO:0000027 ... P04456 37595043
    39 8evr:AX (2.87) BS02 rna ? GO:0000027 ... P04456 37595043
    40 8evr:AY (2.87) BS01 rna ? GO:0002181 ... P05743 37595043
    41 8evr:AY (2.87) BS02 rna ? GO:0002181 ... P05743 37595043
    42 8evr:AZ (2.87) BS01 rna ? GO:0002181 ... P0C2H6 37595043
    43 8evr:Aa (2.87) BS01 rna ? GO:0002181 ... P02406 37595043
    44 8evr:Ab (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    45 8evr:Ac (2.87) BS01 rna ? GO:0002181 ... P14120 37595043
    46 8evr:Ad (2.87) BS01 rna ? GO:0002181 ... P0C2H8 37595043
    47 8evr:Ae (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    48 8evr:Af (2.87) BS01 rna ? GO:0000027 ... P05744 37595043
    49 8evr:Ag (2.87) BS01 rna ? GO:0002181 ... P87262 37595043
    50 8evr:Ah (2.87) BS01 rna ? GO:0000463 ... P0CX84 37595043
    51 8evr:Ah (2.87) BS02 rna ? GO:0000463 ... P0CX84 37595043
    52 8evr:Ai (2.87) BS01 rna ? GO:0002181 ... P05745 37595043
    53 8evr:Aj (2.87) BS01 rna ? GO:0000448 ... P49166 37595043
    54 8evr:Aj (2.87) BS02 rna ? GO:0000448 ... P49166 37595043
    55 8evr:Ak (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    56 8evr:Al (2.87) BS01 rna ? GO:0002181 ... P04650 37595043
    57 8evr:Al (2.87) BS02 rna ? GO:0002181 ... P04650 37595043
    58 8evr:Am (2.87) BS01 rna ? GO:0000027 ... P0CH08 37595043
    59 8evr:Ao (2.87) BS01 rna ? GO:0002181 ... P0CX27 37595043
    60 8evr:Ao (2.87) BS02 ZN ? GO:0002181 ... P0CX27 37595043
    61 8evr:Ap (2.87) BS01 rna ? GO:0002181 ... P0CX25 37595043
    62 8evr:BA (2.87) BS01 G ? GO:0000028 ... P32905 37595043
    63 8evr:BA (2.87) BS02 A ? GO:0000028 ... P32905 37595043
    64 8evr:BB (2.87) BS01 rna ? GO:0003735 ... N/A 37595043
    65 8evr:BB (2.87) BS02 rna ? GO:0003735 ... N/A 37595043
    66 8evr:BB (2.87) BS03 U ? GO:0003735 ... N/A 37595043
    67 8evr:BC (2.87) BS01 rna ? GO:0003723 ... N/A 37595043
    68 8evr:BC (2.87) BS02 U ? GO:0003723 ... N/A 37595043
    69 8evr:BD (2.87) BS01 rna ? GO:0003723 ... N/A 37595043
    70 8evr:BD (2.87) BS02 A ? GO:0003723 ... N/A 37595043
    71 8evr:BD (2.87) BS03 U ? GO:0003723 ... N/A 37595043
    72 8evr:BD (2.87) BS04 G ? GO:0003723 ... N/A 37595043
    73 8evr:BD (2.87) BS05 G ? GO:0003723 ... N/A 37595043
    74 8evr:BD (2.87) BS06 C ? GO:0003723 ... N/A 37595043
    75 8evr:BD (2.87) BS07 G ? GO:0003723 ... N/A 37595043
    76 8evr:BD (2.87) BS08 C ? GO:0003723 ... N/A 37595043
    77 8evr:BD (2.87) BS09 U ? GO:0003723 ... N/A 37595043
    78 8evr:BD (2.87) BS10 A ? GO:0003723 ... N/A 37595043
    79 8evr:BE (2.87) BS01 rna ? GO:0002181 ... P0CX35 37595043
    80 8evr:BF (2.87) BS01 rna ? GO:0000028 ... A0A1L4AA68 37595043
    81 8evr:BF (2.87) BS02 rna ? GO:0000028 ... A0A1L4AA68 37595043
    82 8evr:BF (2.87) BS03 A ? GO:0000028 ... A0A1L4AA68 37595043
    83 8evr:BF (2.87) BS04 U ? GO:0000028 ... A0A1L4AA68 37595043
    84 8evr:BF (2.87) BS05 C ? GO:0000028 ... A0A1L4AA68 37595043
    85 8evr:BF (2.87) BS06 U ? GO:0000028 ... A0A1L4AA68 37595043
    86 8evr:BF (2.87) BS07 U ? GO:0000028 ... A0A1L4AA68 37595043
    87 8evr:BF (2.87) BS08 G ? GO:0000028 ... A0A1L4AA68 37595043
    88 8evr:BF (2.87) BS09 U ? GO:0000028 ... A0A1L4AA68 37595043
    89 8evr:BF (2.87) BS10 A ? GO:0000028 ... A0A1L4AA68 37595043
    90 8evr:BF (2.87) BS11 U ? GO:0000028 ... A0A1L4AA68 37595043
    91 8evr:BG (2.87) BS01 rna ? GO:0000462 ... P0CX37 37595043
    92 8evr:BG (2.87) BS02 A ? GO:0000462 ... P0CX37 37595043
    93 8evr:BG (2.87) BS03 U ? GO:0000462 ... P0CX37 37595043
    94 8evr:BH (2.87) BS01 rna ? GO:0002181 ... P26786 37595043
    95 8evr:BI (2.87) BS01 rna ? GO:0000462 ... P0CX39 37595043
    96 8evr:BI (2.87) BS02 rna ? GO:0000462 ... P0CX39 37595043
    97 8evr:BI (2.87) BS03 U ? GO:0000462 ... P0CX39 37595043
    98 8evr:BI (2.87) BS04 A ? GO:0000462 ... P0CX39 37595043
    99 8evr:BI (2.87) BS05 C ? GO:0000462 ... P0CX39 37595043
    100 8evr:BJ (2.87) BS01 rna ? GO:0000462 ... O13516 37595043
    101 8evr:BK (2.87) BS01 A ? GO:0000054 ... Q08745 37595043
    102 8evr:BK (2.87) BS02 A ? GO:0000054 ... Q08745 37595043
    103 8evr:BK (2.87) BS03 U ? GO:0000054 ... Q08745 37595043
    104 8evr:BK (2.87) BS04 G ? GO:0000054 ... Q08745 37595043
    105 8evr:BL (2.87) BS01 rna ? GO:0000028 ... P0CX47 37595043
    106 8evr:BM (2.87) BS01 A ? GO:0003735 ... N/A 37595043
    107 8evr:BM (2.87) BS02 G ? GO:0003735 ... N/A 37595043
    108 8evr:BM (2.87) BS03 G ? GO:0003735 ... N/A 37595043
    109 8evr:BM (2.87) BS04 G ? GO:0003735 ... N/A 37595043
    110 8evr:BN (2.87) BS01 rna ? GO:0000462 ... P05756 37595043
    111 8evr:BO (2.87) BS01 rna ? GO:0000028 ... P06367 37595043
    112 8evr:BO (2.87) BS02 U ? GO:0000028 ... P06367 37595043
    113 8evr:BO (2.87) BS03 C ? GO:0000028 ... P06367 37595043
    114 8evr:BO (2.87) BS04 G ? GO:0000028 ... P06367 37595043
    115 8evr:BO (2.87) BS05 U ? GO:0000028 ... P06367 37595043
    116 8evr:BO (2.87) BS06 G ? GO:0000028 ... P06367 37595043
    117 8evr:BP (2.87) BS01 rna ? GO:0003723 ... N/A 37595043
    118 8evr:BP (2.87) BS02 A ? GO:0003723 ... N/A 37595043
    119 8evr:BP (2.87) BS03 G ? GO:0003723 ... N/A 37595043
    120 8evr:BP (2.87) BS04 G ? GO:0003723 ... N/A 37595043
    121 8evr:BP (2.87) BS05 C ? GO:0003723 ... N/A 37595043
    122 8evr:BP (2.87) BS06 U ? GO:0003723 ... N/A 37595043
    123 8evr:BP (2.87) BS07 U ? GO:0003723 ... N/A 37595043
    124 8evr:BP (2.87) BS08 G ? GO:0003723 ... N/A 37595043
    125 8evr:BP (2.87) BS09 A ? GO:0003723 ... N/A 37595043
    126 8evr:BP (2.87) BS10 A ? GO:0003723 ... N/A 37595043
    127 8evr:BP (2.87) BS11 U ? GO:0003723 ... N/A 37595043
    128 8evr:BP (2.87) BS12 U ? GO:0003723 ... N/A 37595043
    129 8evr:BQ (2.87) BS01 rna ? GO:0000462 ... P0CX51 37595043
    130 8evr:BQ (2.87) BS02 U ? GO:0000462 ... P0CX51 37595043
    131 8evr:BQ (2.87) BS03 U ? GO:0000462 ... P0CX51 37595043
    132 8evr:BQ (2.87) BS04 C ? GO:0000462 ... P0CX51 37595043
    133 8evr:BQ (2.87) BS05 A ? GO:0000462 ... P0CX51 37595043
    134 8evr:BQ (2.87) BS06 A ? GO:0000462 ... P0CX51 37595043
    135 8evr:BQ (2.87) BS07 C ? GO:0000462 ... P0CX51 37595043
    136 8evr:BQ (2.87) BS08 A ? GO:0000462 ... P0CX51 37595043
    137 8evr:BQ (2.87) BS09 G ? GO:0000462 ... P0CX51 37595043
    138 8evr:BQ (2.87) BS10 U ? GO:0000462 ... P0CX51 37595043
    139 8evr:BQ (2.87) BS11 A ? GO:0000462 ... P0CX51 37595043
    140 8evr:BQ (2.87) BS12 G ? GO:0000462 ... P0CX51 37595043
    141 8evr:BQ (2.87) BS13 C ? GO:0000462 ... P0CX51 37595043
    142 8evr:BQ (2.87) BS14 U ? GO:0000462 ... P0CX51 37595043
    143 8evr:BQ (2.87) BS15 U ? GO:0000462 ... P0CX51 37595043
    144 8evr:BQ (2.87) BS16 U ? GO:0000462 ... P0CX51 37595043
    145 8evr:BQ (2.87) BS17 C ? GO:0000462 ... P0CX51 37595043
    146 8evr:BQ (2.87) BS18 3AU ? GO:0000462 ... P0CX51 37595043
    147 8evr:BQ (2.87) BS19 U ? GO:0000462 ... P0CX51 37595043
    148 8evr:BR (2.87) BS01 G ? GO:0000028 ... P02407 37595043
    149 8evr:BR (2.87) BS02 G ? GO:0000028 ... P02407 37595043
    150 8evr:BR (2.87) BS03 C ? GO:0000028 ... P02407 37595043
    151 8evr:BR (2.87) BS04 U ? GO:0000028 ... P02407 37595043
    152 8evr:BR (2.87) BS05 G ? GO:0000028 ... P02407 37595043
    153 8evr:BR (2.87) BS06 U ? GO:0000028 ... P02407 37595043
    154 8evr:BS (2.87) BS01 rna ? GO:0000054 ... P0CX55 37595043
    155 8evr:BS (2.87) BS02 C ? GO:0000054 ... P0CX55 37595043
    156 8evr:BS (2.87) BS03 G ? GO:0000054 ... P0CX55 37595043
    157 8evr:BS (2.87) BS04 A ? GO:0000054 ... P0CX55 37595043
    158 8evr:BS (2.87) BS05 G ? GO:0000054 ... P0CX55 37595043
    159 8evr:BS (2.87) BS06 A ? GO:0000054 ... P0CX55 37595043
    160 8evr:BS (2.87) BS07 G ? GO:0000054 ... P0CX55 37595043
    161 8evr:BS (2.87) BS08 A ? GO:0000054 ... P0CX55 37595043
    162 8evr:BS (2.87) BS09 C ? GO:0000054 ... P0CX55 37595043
    163 8evr:BS (2.87) BS10 U ? GO:0000054 ... P0CX55 37595043
    164 8evr:BS (2.87) BS11 U ? GO:0000054 ... P0CX55 37595043
    165 8evr:BS (2.87) BS12 G ? GO:0000054 ... P0CX55 37595043
    166 8evr:BT (2.87) BS01 A ? GO:0000028 ... P07280 37595043
    167 8evr:BT (2.87) BS02 G ? GO:0000028 ... P07280 37595043
    168 8evr:BT (2.87) BS03 C ? GO:0000028 ... P07280 37595043
    169 8evr:BT (2.87) BS04 A ? GO:0000028 ... P07280 37595043
    170 8evr:BT (2.87) BS05 C ? GO:0000028 ... P07280 37595043
    171 8evr:BT (2.87) BS06 G ? GO:0000028 ... P07280 37595043
    172 8evr:BT (2.87) BS07 G ? GO:0000028 ... P07280 37595043
    173 8evr:BT (2.87) BS08 A ? GO:0000028 ... P07280 37595043
    174 8evr:BT (2.87) BS09 G ? GO:0000028 ... P07280 37595043
    175 8evr:BT (2.87) BS10 C ? GO:0000028 ... P07280 37595043
    176 8evr:BT (2.87) BS11 G ? GO:0000028 ... P07280 37595043
    177 8evr:BT (2.87) BS12 G ? GO:0000028 ... P07280 37595043
    178 8evr:BT (2.87) BS13 C ? GO:0000028 ... P07280 37595043
    179 8evr:BT (2.87) BS14 G ? GO:0000028 ... P07280 37595043
    180 8evr:BT (2.87) BS15 G ? GO:0000028 ... P07280 37595043
    181 8evr:BT (2.87) BS16 G ? GO:0000028 ... P07280 37595043
    182 8evr:BT (2.87) BS17 G ? GO:0000028 ... P07280 37595043
    183 8evr:BT (2.87) BS18 C ? GO:0000028 ... P07280 37595043
    184 8evr:BT (2.87) BS19 G ? GO:0000028 ... P07280 37595043
    185 8evr:BU (2.87) BS01 G ? GO:0003723 ... N/A 37595043
    186 8evr:BU (2.87) BS02 A ? GO:0003723 ... N/A 37595043
    187 8evr:BU (2.87) BS03 U ? GO:0003723 ... N/A 37595043
    188 8evr:BU (2.87) BS04 U ? GO:0003723 ... N/A 37595043
    189 8evr:BU (2.87) BS05 A ? GO:0003723 ... N/A 37595043
    190 8evr:BU (2.87) BS06 G ? GO:0003723 ... N/A 37595043
    191 8evr:BU (2.87) BS07 G ? GO:0003723 ... N/A 37595043
    192 8evr:BU (2.87) BS08 G ? GO:0003723 ... N/A 37595043
    193 8evr:BU (2.87) BS09 A ? GO:0003723 ... N/A 37595043
    194 8evr:BU (2.87) BS10 U ? GO:0003723 ... N/A 37595043
    195 8evr:BU (2.87) BS11 G ? GO:0003723 ... N/A 37595043
    196 8evr:BU (2.87) BS12 4AC ? GO:0003723 ... N/A 37595043
    197 8evr:BU (2.87) BS13 A ? GO:0003723 ... N/A 37595043
    198 8evr:BU (2.87) BS14 C ? GO:0003723 ... N/A 37595043
    199 8evr:BU (2.87) BS15 G ? GO:0003723 ... N/A 37595043
    200 8evr:BV (2.87) BS01 rna ? GO:0000447 ... P0C0V8 37595043
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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