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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8dfa:A (2.8) BS01 rna 3.1.-.- GO:0003723 ... Q72WF9 36805026
    2 8dfa:B (2.8) BS01 rna ? GO:0043571 ... Q72WF7 36805026
    3 8dfa:B (2.8) BS02 dna ? GO:0043571 ... Q72WF7 36805026
    4 8dfa:C (2.8) BS01 rna ? GO:0043571 ... Q72WF7 36805026
    5 8dfa:C (2.8) BS02 dna ? GO:0043571 ... Q72WF7 36805026
    6 8dfa:D (2.8) BS01 rna ? GO:0043571 ... Q72WF7 36805026
    7 8dfa:D (2.8) BS02 dna ? GO:0043571 ... Q72WF7 36805026
    8 8dfa:E (2.8) BS01 rna ? GO:0043571 ... Q72WF7 36805026
    9 8dfa:E (2.8) BS02 dna ? GO:0043571 ... Q72WF7 36805026
    10 8dfa:F (2.8) BS01 rna ? GO:0043571 ... Q72WF7 36805026
    11 8dfa:G (2.8) BS01 rna ? GO:0043571 ... Q72WF7 36805026
    12 8dfa:H (2.8) BS01 rna ? GO:0043571 ... Q72WF7 36805026
    13 8dfa:I (2.8) BS01 rna ? N/A Q72WF8 36805026
    14 8dfa:I (2.8) BS02 dna ? N/A Q72WF8 36805026
    15 8dfa:J (2.8) BS01 dna ? N/A Q72WF8 36805026
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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