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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8d8l:0 (2.6) BS01 rna 2.1.1.- GO:0003735 ... P36056 36482135
    2 8d8l:0 (2.6) BS02 SF4 2.1.1.- GO:0003735 ... P36056 36482135
    3 8d8l:2 (2.6) BS01 rna ? GO:0003735 ... P38783 36482135
    4 8d8l:3 (2.6) BS01 rna ? GO:0003735 ... P47141 36482135
    5 8d8l:5 (2.6) BS01 rna ? GO:0003735 ... P12686 36482135
    6 8d8l:6 (2.6) BS01 rna ? GO:0003735 ... P53292 36482135
    7 8d8l:A (2.6) BS01 rna ? GO:0003735 ... Q02950 36482135
    8 8d8l:B (2.6) BS01 rna ? GO:0003735 ... P32902 36482135
    9 8d8l:B (2.6) BS02 MG ? GO:0003735 ... P32902 36482135
    10 8d8l:C (2.6) BS01 rna ? GO:0003735 ... P02381 36482135
    11 8d8l:D (2.6) BS01 rna ? GO:0003723 ... P27929 36482135
    12 8d8l:E (2.6) BS01 rna ? GO:0003723 ... P33759 36482135
    13 8d8l:F (2.6) BS01 rna ? GO:0003735 ... P28778 36482135
    14 8d8l:G (2.6) BS01 rna ? GO:0000028 ... P47150 36482135
    15 8d8l:H (2.6) BS01 rna ? GO:0003735 ... Q03799 36482135
    16 8d8l:I (2.6) BS01 rna ? GO:0003723 ... P38120 36482135
    17 8d8l:J (2.6) BS01 rna ? GO:0003735 ... Q03201 36482135
    18 8d8l:K (2.6) BS01 rna ? GO:0003735 ... P42847 36482135
    19 8d8l:L (2.6) BS01 rna ? GO:0003735 ... P53732 36482135
    20 8d8l:M (2.6) BS01 rna ? GO:0003676 ... P53937 36482135
    21 8d8l:N (2.6) BS01 rna ? GO:0003735 ... P10663 36482135
    22 8d8l:O (2.6) BS01 rna ? GO:0003735 ... P21771 36482135
    23 8d8l:P (2.6) BS01 rna ? GO:0003735 ... Q02608 36482135
    24 8d8l:Q (2.6) BS01 rna ? GO:0003735 ... Q03246 36482135
    25 8d8l:R (2.6) BS01 rna ? GO:0003735 ... P40033 36482135
    26 8d8l:S (2.6) BS01 rna ? GO:0000028 ... P53733 36482135
    27 8d8l:T (2.6) BS01 rna ? GO:0003735 ... P38175 36482135
    28 8d8l:U (2.6) BS01 rna ? GO:0003735 ... P40496 36482135
    29 8d8l:V (2.6) BS01 rna ? GO:0003735 ... P17558 36482135
    30 8d8l:W (2.6) BS01 rna ? GO:0003735 ... Q01163 36482135
    31 8d8l:W (2.6) BS02 ATP ? GO:0003735 ... Q01163 36482135
    32 8d8l:X (2.6) BS01 rna ? GO:0003735 ... P53305 36482135
    33 8d8l:Y (2.6) BS01 rna ? GO:0003735 ... Q03976 36482135
    34 8d8l:Z (2.6) BS01 rna ? GO:0003735 ... O75012 36482135
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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