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BioLiP
Download all results in tab-seperated text for 42 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8cvm:0 (2.66) BS01 rna ? GO:0003735 ... Q6A6J5 36864821
    2 8cvm:0 (2.66) BS02 ZN ? GO:0003735 ... Q6A6J5 36864821
    3 8cvm:1 (2.66) BS01 rna ? GO:0003735 ... Q6A5A1 36864821
    4 8cvm:1 (2.66) BS02 MG ? GO:0003735 ... Q6A5A1 36864821
    5 8cvm:2 (2.66) BS01 rna ? GO:0003735 ... Q6A7V2 36864821
    6 8cvm:3 (2.66) BS01 rna ? GO:0003735 ... Q6A6Q7 36864821
    7 8cvm:4 (2.66) BS01 rna ? GO:0003735 ... Q6A8B4 36864821
    8 8cvm:4 (2.66) BS02 ZN ? GO:0003735 ... Q6A8B4 36864821
    9 8cvm:c (2.66) BS01 rna ? GO:0002181 ... Q6A6M9 36864821
    10 8cvm:c (2.66) BS02 MG ? GO:0002181 ... Q6A6M9 36864821
    11 8cvm:d (2.66) BS01 rna ? GO:0003735 ... Q6A6M6 36864821
    12 8cvm:e (2.66) BS01 rna ? GO:0003735 ... Q6A6M7 36864821
    13 8cvm:f (2.66) BS01 rna ? GO:0000049 ... Q6A6N8 36864821
    14 8cvm:f (2.66) BS02 rna ? GO:0000049 ... Q6A6N8 36864821
    15 8cvm:f (2.66) BS03 rna ? GO:0000049 ... Q6A6N8 36864821
    16 8cvm:g (2.66) BS01 rna ? GO:0002181 ... Q6A6P1 36864821
    17 8cvm:i (2.66) BS01 rna ? GO:0003729 ... Q6A6T3 36864821
    18 8cvm:j (2.66) BS01 rna ? GO:0003735 ... Q6A6N6 36864821
    19 8cvm:k (2.66) BS01 rna ? GO:0003735 ... Q6A6P5 36864821
    20 8cvm:k (2.66) BS02 MG ? GO:0003735 ... Q6A6P5 36864821
    21 8cvm:l (2.66) BS01 rna ? GO:0000049 ... Q6A6N3 36864821
    22 8cvm:l (2.66) BS02 rna ? GO:0000049 ... Q6A6N3 36864821
    23 8cvm:m (2.66) BS01 rna ? GO:0003735 ... Q6A6R2 36864821
    24 8cvm:n (2.66) BS01 rna ? GO:0003735 ... Q6A6P2 36864821
    25 8cvm:n (2.66) BS02 rna ? GO:0003735 ... Q6A6P2 36864821
    26 8cvm:o (2.66) BS01 rna ? GO:0003735 ... Q6A7T1 36864821
    27 8cvm:p (2.66) BS01 rna ? GO:0000027 ... Q6A7V3 36864821
    28 8cvm:q (2.66) BS01 rna ? GO:0003723 ... Q6A9I3 36864821
    29 8cvm:r (2.66) BS01 rna ? GO:0003735 ... Q6A6N1 36864821
    30 8cvm:s (2.66) BS01 rna ? GO:0000027 ... Q6A6M8 36864821
    31 8cvm:t (2.66) BS01 rna ? GO:0003723 ... Q6A6N7 36864821
    32 8cvm:u (2.66) BS01 rna ? GO:0003723 ... Q6AAC8 36864821
    33 8cvm:u (2.66) BS02 rna ? GO:0003723 ... Q6AAC8 36864821
    34 8cvm:v (2.66) BS01 rna ? GO:0003735 ... Q6A9I2 36864821
    35 8cvm:v (2.66) BS02 rna ? GO:0003735 ... Q6A9I2 36864821
    36 8cvm:w (2.66) BS01 rna ? GO:0003735 ... A0A2B7I7B7 36864821
    37 8cvm:w (2.66) BS02 ZN ? GO:0003735 ... A0A2B7I7B7 36864821
    38 8cvm:x (2.66) BS01 rna ? GO:0003735 ... Q6A6N4 36864821
    39 8cvm:y (2.66) BS01 rna ? GO:0003735 ... Q6A6P4 36864821
    40 8cvm:y (2.66) BS02 rna ? GO:0003735 ... Q6A6P4 36864821
    41 8cvm:z (2.66) BS01 rna ? GO:0003735 ... A0A2B7I771 36864821
    42 8cvm:z (2.66) BS02 ZN ? GO:0003735 ... A0A2B7I771 36864821
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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