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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 265 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8cvk:10 (2.5) BS01 rna ? GO:0003735 ... P60493 36316410
    2 8cvk:10 (2.5) BS02 rna ? GO:0003735 ... P60493 36316410
    3 8cvk:10 (2.5) BS03 rna ? GO:0003735 ... P60493 36316410
    4 8cvk:10 (2.5) BS04 MG ? GO:0003735 ... P60493 36316410
    5 8cvk:10 (2.5) BS05 MG ? GO:0003735 ... P60493 36316410
    6 8cvk:11 (2.5) BS01 rna ? GO:0003735 ... P60494 36316410
    7 8cvk:11 (2.5) BS02 rna ? GO:0003735 ... P60494 36316410
    8 8cvk:11 (2.5) BS03 MG ? GO:0003735 ... P60494 36316410
    9 8cvk:12 (2.5) BS01 rna ? GO:0003735 ... Q5SHP6 36316410
    10 8cvk:12 (2.5) BS02 MG ? GO:0003735 ... Q5SHP6 36316410
    11 8cvk:13 (2.5) BS01 rna ? GO:0003735 ... Q5SHQ6 36316410
    12 8cvk:13 (2.5) BS02 rna ? GO:0003735 ... Q5SHQ6 36316410
    13 8cvk:13 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 36316410
    14 8cvk:13 (2.5) BS04 MG ? GO:0003735 ... Q5SHQ6 36316410
    15 8cvk:14 (2.5) BS01 rna ? GO:0003735 ... Q5SJE1 36316410
    16 8cvk:14 (2.5) BS02 ZN ? GO:0003735 ... Q5SJE1 36316410
    17 8cvk:15 (2.5) BS01 rna ? GO:0003735 ... P80339 36316410
    18 8cvk:15 (2.5) BS02 MG ? GO:0003735 ... P80339 36316410
    19 8cvk:15 (2.5) BS03 MG ? GO:0003735 ... P80339 36316410
    20 8cvk:15 (2.5) BS04 ZN ? GO:0003735 ... P80339 36316410
    21 8cvk:16 (2.5) BS01 rna ? GO:0000049 ... P35871 36316410
    22 8cvk:16 (2.5) BS02 MG ? GO:0000049 ... P35871 36316410
    23 8cvk:16 (2.5) BS03 ZN ? GO:0000049 ... P35871 36316410
    24 8cvk:17 (2.5) BS01 rna ? GO:0003735 ... P80340 36316410
    25 8cvk:17 (2.5) BS02 MG ? GO:0003735 ... P80340 36316410
    26 8cvk:18 (2.5) BS01 rna ? GO:0003735 ... Q5SKU1 36316410
    27 8cvk:18 (2.5) BS02 MG ? GO:0003735 ... Q5SKU1 36316410
    28 8cvk:18 (2.5) BS03 MG ? GO:0003735 ... Q5SKU1 36316410
    29 8cvk:18 (2.5) BS04 MG ? GO:0003735 ... Q5SKU1 36316410
    30 8cvk:18 (2.5) BS05 MG ? GO:0003735 ... Q5SKU1 36316410
    31 8cvk:19 (2.5) BS01 rna ? GO:0003735 ... Q5SHR2 36316410
    32 8cvk:19 (2.5) BS02 ZN ? GO:0003735 ... Q5SHR2 36316410
    33 8cvk:1D (2.5) BS01 rna ? GO:0002181 ... P60405 36316410
    34 8cvk:1D (2.5) BS02 rna ? GO:0002181 ... P60405 36316410
    35 8cvk:1D (2.5) BS03 MG ? GO:0002181 ... P60405 36316410
    36 8cvk:1D (2.5) BS04 MG ? GO:0002181 ... P60405 36316410
    37 8cvk:1D (2.5) BS05 MG ? GO:0002181 ... P60405 36316410
    38 8cvk:1D (2.5) BS06 MG ? GO:0002181 ... P60405 36316410
    39 8cvk:1D (2.5) BS07 MG ? GO:0002181 ... P60405 36316410
    40 8cvk:1D (2.5) BS08 MG ? GO:0002181 ... P60405 36316410
    41 8cvk:1D (2.5) BS09 MG ? GO:0002181 ... P60405 36316410
    42 8cvk:1D (2.5) BS10 MG ? GO:0002181 ... P60405 36316410
    43 8cvk:1D (2.5) BS11 MG ? GO:0002181 ... P60405 36316410
    44 8cvk:1D (2.5) BS12 MG ? GO:0002181 ... P60405 36316410
    45 8cvk:1D (2.5) BS13 MG ? GO:0002181 ... P60405 36316410
    46 8cvk:1E (2.5) BS01 rna ? GO:0003735 ... Q5SHN8 36316410
    47 8cvk:1E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 36316410
    48 8cvk:1E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 36316410
    49 8cvk:1E (2.5) BS04 MG ? GO:0003735 ... Q5SHN8 36316410
    50 8cvk:1E (2.5) BS05 MG ? GO:0003735 ... Q5SHN8 36316410
    51 8cvk:1E (2.5) BS06 MG ? GO:0003735 ... Q5SHN8 36316410
    52 8cvk:1F (2.5) BS01 rna ? GO:0003735 ... Q5SHN9 36316410
    53 8cvk:1F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 36316410
    54 8cvk:1F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 36316410
    55 8cvk:1F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 36316410
    56 8cvk:1F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 36316410
    57 8cvk:1F (2.5) BS06 MG ? GO:0003735 ... Q5SHN9 36316410
    58 8cvk:1F (2.5) BS07 MG ? GO:0003735 ... Q5SHN9 36316410
    59 8cvk:1F (2.5) BS08 MG ? GO:0003735 ... Q5SHN9 36316410
    60 8cvk:1F (2.5) BS09 MG ? GO:0003735 ... Q5SHN9 36316410
    61 8cvk:1G (2.5) BS01 rna ? GO:0000049 ... Q5SHQ0 36316410
    62 8cvk:1G (2.5) BS02 rna ? GO:0000049 ... Q5SHQ0 36316410
    63 8cvk:1G (2.5) BS03 MG ? GO:0000049 ... Q5SHQ0 36316410
    64 8cvk:1G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 36316410
    65 8cvk:1H (2.5) BS01 rna ? GO:0002181 ... P0DOY8 36316410
    66 8cvk:1I (2.5) BS01 rna ? GO:0003735 ... Q5SLQ1 36316410
    67 8cvk:1I (2.5) BS02 MG ? GO:0003735 ... Q5SLQ1 36316410
    68 8cvk:1N (2.5) BS01 rna ? GO:0003729 ... P60488 36316410
    69 8cvk:1N (2.5) BS02 MG ? GO:0003729 ... P60488 36316410
    70 8cvk:1N (2.5) BS03 MG ? GO:0003729 ... P60488 36316410
    71 8cvk:1N (2.5) BS04 MG ? GO:0003729 ... P60488 36316410
    72 8cvk:1N (2.5) BS05 MG ? GO:0003729 ... P60488 36316410
    73 8cvk:1O (2.5) BS01 rna ? GO:0003735 ... Q5SHP8 36316410
    74 8cvk:1O (2.5) BS02 rna ? GO:0003735 ... Q5SHP8 36316410
    75 8cvk:1O (2.5) BS03 MG ? GO:0003735 ... Q5SHP8 36316410
    76 8cvk:1O (2.5) BS04 MG ? GO:0003735 ... Q5SHP8 36316410
    77 8cvk:1P (2.5) BS01 rna ? GO:0003735 ... Q5SHQ7 36316410
    78 8cvk:1P (2.5) BS02 MG ? GO:0003735 ... Q5SHQ7 36316410
    79 8cvk:1P (2.5) BS03 MG ? GO:0003735 ... Q5SHQ7 36316410
    80 8cvk:1P (2.5) BS04 MG ? GO:0003735 ... Q5SHQ7 36316410
    81 8cvk:1P (2.5) BS05 MG ? GO:0003735 ... Q5SHQ7 36316410
    82 8cvk:1Q (2.5) BS01 rna ? GO:0000049 ... P60489 36316410
    83 8cvk:1Q (2.5) BS02 rna ? GO:0000049 ... P60489 36316410
    84 8cvk:1Q (2.5) BS03 rna ? GO:0000049 ... P60489 36316410
    85 8cvk:1Q (2.5) BS04 rna ? GO:0000049 ... P60489 36316410
    86 8cvk:1Q (2.5) BS05 MG ? GO:0000049 ... P60489 36316410
    87 8cvk:1Q (2.5) BS06 MG ? GO:0000049 ... P60489 36316410
    88 8cvk:1Q (2.5) BS07 MG ? GO:0000049 ... P60489 36316410
    89 8cvk:1Q (2.5) BS08 MG ? GO:0000049 ... P60489 36316410
    90 8cvk:1R (2.5) BS01 rna ? GO:0003735 ... Q9Z9H5 36316410
    91 8cvk:1R (2.5) BS02 MG ? GO:0003735 ... Q9Z9H5 36316410
    92 8cvk:1R (2.5) BS03 MG ? GO:0003735 ... Q9Z9H5 36316410
    93 8cvk:1S (2.5) BS01 rna ? GO:0003735 ... Q5SHQ4 36316410
    94 8cvk:1S (2.5) BS02 rna ? GO:0003735 ... Q5SHQ4 36316410
    95 8cvk:1S (2.5) BS03 MG ? GO:0003735 ... Q5SHQ4 36316410
    96 8cvk:1S (2.5) BS04 MG ? GO:0003735 ... Q5SHQ4 36316410
    97 8cvk:1T (2.5) BS01 rna ? GO:0003735 ... P60490 36316410
    98 8cvk:1T (2.5) BS02 rna ? GO:0003735 ... P60490 36316410
    99 8cvk:1U (2.5) BS01 rna ? GO:0000027 ... P60491 36316410
    100 8cvk:1U (2.5) BS02 MG ? GO:0000027 ... P60491 36316410
    101 8cvk:1U (2.5) BS03 MG ? GO:0000027 ... P60491 36316410
    102 8cvk:1U (2.5) BS04 MG ? GO:0000027 ... P60491 36316410
    103 8cvk:1U (2.5) BS05 MG ? GO:0000027 ... P60491 36316410
    104 8cvk:1U (2.5) BS06 MG ? GO:0000027 ... P60491 36316410
    105 8cvk:1U (2.5) BS07 MG ? GO:0000027 ... P60491 36316410
    106 8cvk:1U (2.5) BS08 MG ? GO:0000027 ... P60491 36316410
    107 8cvk:1V (2.5) BS01 rna ? GO:0003723 ... P60492 36316410
    108 8cvk:1V (2.5) BS02 MG ? GO:0003723 ... P60492 36316410
    109 8cvk:1V (2.5) BS03 MG ? GO:0003723 ... P60492 36316410
    110 8cvk:1V (2.5) BS04 MG ? GO:0003723 ... P60492 36316410
    111 8cvk:1V (2.5) BS05 MG ? GO:0003723 ... P60492 36316410
    112 8cvk:1V (2.5) BS06 MG ? GO:0003723 ... P60492 36316410
    113 8cvk:1W (2.5) BS01 rna ? GO:0003735 ... Q5SHP3 36316410
    114 8cvk:1W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 36316410
    115 8cvk:1W (2.5) BS03 MG ? GO:0003735 ... Q5SHP3 36316410
    116 8cvk:1W (2.5) BS04 MG ? GO:0003735 ... Q5SHP3 36316410
    117 8cvk:1X (2.5) BS01 rna ? GO:0000027 ... Q5SHP0 36316410
    118 8cvk:1X (2.5) BS02 MG ? GO:0000027 ... Q5SHP0 36316410
    119 8cvk:1X (2.5) BS03 MG ? GO:0000027 ... Q5SHP0 36316410
    120 8cvk:1X (2.5) BS04 MG ? GO:0000027 ... Q5SHP0 36316410
    121 8cvk:1X (2.5) BS05 MG ? GO:0000027 ... Q5SHP0 36316410
    122 8cvk:1X (2.5) BS06 MG ? GO:0000027 ... Q5SHP0 36316410
    123 8cvk:1Y (2.5) BS01 rna ? GO:0003723 ... Q5SHP9 36316410
    124 8cvk:1Y (2.5) BS02 MG ? GO:0003723 ... Q5SHP9 36316410
    125 8cvk:1Y (2.5) BS03 ZN ? GO:0003723 ... Q5SHP9 36316410
    126 8cvk:1Z (2.5) BS01 rna ? GO:0003723 ... Q5SHZ1 36316410
    127 8cvk:1Z (2.5) BS02 rna ? GO:0003723 ... Q5SHZ1 36316410
    128 8cvk:1Z (2.5) BS03 MG ? GO:0003723 ... Q5SHZ1 36316410
    129 8cvk:1b (2.5) BS01 rna ? GO:0003735 ... P80371 36316410
    130 8cvk:1c (2.5) BS01 rna ? GO:0003676 ... P80372 36316410
    131 8cvk:1d (2.5) BS01 rna ? GO:0003723 ... P80373 36316410
    132 8cvk:1d (2.5) BS02 SF4 ? GO:0003723 ... P80373 36316410
    133 8cvk:1e (2.5) BS01 rna ? GO:0003723 ... Q5SHQ5 36316410
    134 8cvk:1e (2.5) BS02 MG ? GO:0003723 ... Q5SHQ5 36316410
    135 8cvk:1e (2.5) BS03 MG ? GO:0003723 ... Q5SHQ5 36316410
    136 8cvk:1f (2.5) BS01 rna ? GO:0003735 ... Q5SLP8 36316410
    137 8cvk:1g (2.5) BS01 rna ? GO:0000028 ... P17291 36316410
    138 8cvk:1g (2.5) BS02 rna ? GO:0000028 ... P17291 36316410
    139 8cvk:1h (2.5) BS01 rna ? GO:0003735 ... P0DOY9 36316410
    140 8cvk:1i (2.5) BS01 rna ? GO:0000049 ... P80374 36316410
    141 8cvk:1j (2.5) BS01 rna ? GO:0000049 ... Q5SHN7 36316410
    142 8cvk:1k (2.5) BS01 rna ? GO:0003735 ... P80376 36316410
    143 8cvk:1k (2.5) BS02 MG ? GO:0003735 ... P80376 36316410
    144 8cvk:1l (2.5) BS01 rna ? GO:0000049 ... Q5SHN3 36316410
    145 8cvk:1l (2.5) BS02 rna ? GO:0000049 ... Q5SHN3 36316410
    146 8cvk:1l (2.5) BS03 MG ? GO:0000049 ... Q5SHN3 36316410
    147 8cvk:1m (2.5) BS01 rna ? GO:0000049 ... P80377 36316410
    148 8cvk:1m (2.5) BS02 rna ? GO:0000049 ... P80377 36316410
    149 8cvk:1m (2.5) BS03 rna ? GO:0000049 ... P80377 36316410
    150 8cvk:1m (2.5) BS04 MG ? GO:0000049 ... P80377 36316410
    151 8cvk:1n (2.5) BS01 rna ? GO:0003735 ... P0DOY6 36316410
    152 8cvk:1n (2.5) BS02 ZN ? GO:0003735 ... P0DOY6 36316410
    153 8cvk:1o (2.5) BS01 rna ? GO:0003735 ... Q5SJ76 36316410
    154 8cvk:1o (2.5) BS02 rna ? GO:0003735 ... Q5SJ76 36316410
    155 8cvk:1p (2.5) BS01 rna ? GO:0003735 ... Q5SJH3 36316410
    156 8cvk:1q (2.5) BS01 rna ? GO:0003735 ... P0DOY7 36316410
    157 8cvk:1r (2.5) BS01 rna ? GO:0003735 ... Q5SLQ0 36316410
    158 8cvk:1s (2.5) BS01 rna ? GO:0000028 ... Q5SHP2 36316410
    159 8cvk:1t (2.5) BS01 rna ? GO:0003723 ... P80380 36316410
    160 8cvk:20 (2.5) BS01 rna ? GO:0003735 ... P60493 36316410
    161 8cvk:20 (2.5) BS02 rna ? GO:0003735 ... P60493 36316410
    162 8cvk:20 (2.5) BS03 rna ? GO:0003735 ... P60493 36316410
    163 8cvk:21 (2.5) BS01 rna ? GO:0003735 ... P60494 36316410
    164 8cvk:21 (2.5) BS02 rna ? GO:0003735 ... P60494 36316410
    165 8cvk:22 (2.5) BS01 rna ? GO:0003735 ... Q5SHP6 36316410
    166 8cvk:23 (2.5) BS01 rna ? GO:0003735 ... Q5SHQ6 36316410
    167 8cvk:23 (2.5) BS02 rna ? GO:0003735 ... Q5SHQ6 36316410
    168 8cvk:23 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 36316410
    169 8cvk:24 (2.5) BS01 rna ? GO:0003735 ... Q5SJE1 36316410
    170 8cvk:24 (2.5) BS02 ZN ? GO:0003735 ... Q5SJE1 36316410
    171 8cvk:25 (2.5) BS01 rna ? GO:0003735 ... P80339 36316410
    172 8cvk:25 (2.5) BS02 MG ? GO:0003735 ... P80339 36316410
    173 8cvk:25 (2.5) BS03 ZN ? GO:0003735 ... P80339 36316410
    174 8cvk:26 (2.5) BS01 rna ? GO:0000049 ... P35871 36316410
    175 8cvk:26 (2.5) BS02 MG ? GO:0000049 ... P35871 36316410
    176 8cvk:26 (2.5) BS03 ZN ? GO:0000049 ... P35871 36316410
    177 8cvk:27 (2.5) BS01 rna ? GO:0003735 ... P80340 36316410
    178 8cvk:28 (2.5) BS01 rna ? GO:0003735 ... Q5SKU1 36316410
    179 8cvk:28 (2.5) BS02 MG ? GO:0003735 ... Q5SKU1 36316410
    180 8cvk:29 (2.5) BS01 rna ? GO:0003735 ... Q5SHR2 36316410
    181 8cvk:29 (2.5) BS02 ZN ? GO:0003735 ... Q5SHR2 36316410
    182 8cvk:2D (2.5) BS01 rna ? GO:0002181 ... P60405 36316410
    183 8cvk:2D (2.5) BS02 rna ? GO:0002181 ... P60405 36316410
    184 8cvk:2D (2.5) BS03 MG ? GO:0002181 ... P60405 36316410
    185 8cvk:2D (2.5) BS04 MG ? GO:0002181 ... P60405 36316410
    186 8cvk:2D (2.5) BS05 MG ? GO:0002181 ... P60405 36316410
    187 8cvk:2D (2.5) BS06 MG ? GO:0002181 ... P60405 36316410
    188 8cvk:2E (2.5) BS01 rna ? GO:0003735 ... Q5SHN8 36316410
    189 8cvk:2E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 36316410
    190 8cvk:2E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 36316410
    191 8cvk:2F (2.5) BS01 rna ? GO:0003735 ... Q5SHN9 36316410
    192 8cvk:2F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 36316410
    193 8cvk:2F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 36316410
    194 8cvk:2F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 36316410
    195 8cvk:2G (2.5) BS01 rna ? GO:0000049 ... Q5SHQ0 36316410
    196 8cvk:2G (2.5) BS02 rna ? GO:0000049 ... Q5SHQ0 36316410
    197 8cvk:2G (2.5) BS03 rna ? GO:0000049 ... Q5SHQ0 36316410
    198 8cvk:2G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 36316410
    199 8cvk:2H (2.5) BS01 rna ? GO:0002181 ... P0DOY8 36316410
    200 8cvk:2I (2.5) BS01 rna ? GO:0003735 ... Q5SLQ1 36316410
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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