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BioLiP
Download all results in tab-seperated text for 110 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8cku:0 (3.11) BS01 rna ? GO:0000462 ... P0CX31 38030725
    2 8cku:1 (3.11) BS01 rna ? GO:0002181 ... Q3E792 38030725
    3 8cku:2 (3.11) BS01 rna ? GO:0003735 ... N/A 38030725
    4 8cku:2 (3.11) BS02 ZN ? GO:0003735 ... N/A 38030725
    5 8cku:3 (3.11) BS01 rna ? GO:0000028 ... P35997 38030725
    6 8cku:4 (3.11) BS01 rna ? GO:0000028 ... Q3E7X9 38030725
    7 8cku:5 (3.11) BS01 rna ? GO:0003735 ... N/A 38030725
    8 8cku:5 (3.11) BS02 ZN ? GO:0003735 ... N/A 38030725
    9 8cku:6 (3.11) BS01 rna ? GO:0002181 ... P0CX33 38030725
    10 8cku:7 (3.11) BS01 rna ? GO:0001965 ... P38011 38030725
    11 8cku:8 (3.11) BS01 rna ? GO:0003735 ... N/A 38030725
    12 8cku:A (3.11) BS01 rna ? GO:0000470 ... P26784 38030725
    13 8cku:Aa (3.11) BS01 rna ? GO:0003924 ... N/A 38030725
    14 8cku:Aa (3.11) BS02 rna ? GO:0003924 ... N/A 38030725
    15 8cku:Aa (3.11) BS03 GTP ? GO:0003924 ... N/A 38030725
    16 8cku:Aa (3.11) BS04 MG ? GO:0003924 ... N/A 38030725
    17 8cku:B (3.11) BS01 rna ? GO:0000448 ... P05740 38030725
    18 8cku:B (3.11) BS02 rna ? GO:0000448 ... P05740 38030725
    19 8cku:C (3.11) BS01 rna ? GO:0002181 ... P0CX49 38030725
    20 8cku:D (3.11) BS01 rna ? GO:0002181 ... P0CX82 38030725
    21 8cku:D (3.11) BS02 rna ? GO:0002181 ... P0CX82 38030725
    22 8cku:DD (3.11) BS01 rna ? GO:0000027 ... P05317 38030725
    23 8cku:E (3.11) BS01 rna ? GO:0002181 ... P0CX23 38030725
    24 8cku:E (3.11) BS02 rna ? GO:0002181 ... P0CX23 38030725
    25 8cku:EE (3.11) BS01 rna ? GO:0002181 ... P0CX45 38030725
    26 8cku:EE (3.11) BS02 rna ? GO:0002181 ... P0CX45 38030725
    27 8cku:EE (3.11) BS03 MG ? GO:0002181 ... P0CX45 38030725
    28 8cku:Ee (3.11) BS01 rna ? GO:0000027 ... P0CX53 38030725
    29 8cku:F (3.11) BS01 rna ? GO:0002181 ... Q02753 38030725
    30 8cku:F (3.11) BS02 rna ? GO:0002181 ... Q02753 38030725
    31 8cku:FF (3.11) BS01 rna ? GO:0000027 ... P14126 38030725
    32 8cku:G (3.11) BS01 rna ? GO:0002181 ... P05749 38030725
    33 8cku:GG (3.11) BS01 rna ? GO:0002181 ... P10664 38030725
    34 8cku:GG (3.11) BS02 rna ? GO:0002181 ... P10664 38030725
    35 8cku:H (3.11) BS01 rna ? GO:0002181 ... P0CX41 38030725
    36 8cku:H (3.11) BS02 rna ? GO:0002181 ... P0CX41 38030725
    37 8cku:HH (3.11) BS01 rna ? GO:0000027 ... P26321 38030725
    38 8cku:HH (3.11) BS02 rna ? GO:0000027 ... P26321 38030725
    39 8cku:I (3.11) BS01 rna ? GO:0002181 ... P04449 38030725
    40 8cku:II (3.11) BS01 rna ? GO:0000027 ... Q02326 38030725
    41 8cku:J (3.11) BS01 rna ? GO:0000027 ... P04456 38030725
    42 8cku:J (3.11) BS02 rna ? GO:0000027 ... P04456 38030725
    43 8cku:JJ (3.11) BS01 rna ? GO:0000463 ... P05737 38030725
    44 8cku:JJ (3.11) BS02 rna ? GO:0000463 ... P05737 38030725
    45 8cku:K (3.11) BS01 rna ? GO:0002181 ... P05743 38030725
    46 8cku:K (3.11) BS02 rna ? GO:0002181 ... P05743 38030725
    47 8cku:KK (3.11) BS01 rna ? GO:0000470 ... P17076 38030725
    48 8cku:KK (3.11) BS02 rna ? GO:0000470 ... P17076 38030725
    49 8cku:L (3.11) BS01 rna ? GO:0002181 ... P0C2H6 38030725
    50 8cku:LL (3.11) BS01 rna ? GO:0002181 ... P05738 38030725
    51 8cku:M (3.11) BS01 rna ? GO:0002181 ... P02406 38030725
    52 8cku:MM (3.11) BS01 rna ? GO:0000027 ... P41805 38030725
    53 8cku:MM (3.11) BS02 rna ? GO:0000027 ... P41805 38030725
    54 8cku:MM (3.11) BS03 rna ? GO:0000027 ... P41805 38030725
    55 8cku:N (3.11) BS01 rna ? GO:0002181 ... P05747 38030725
    56 8cku:NN (3.11) BS01 rna ? GO:0000027 ... P0C0W9 38030725
    57 8cku:NN (3.11) BS02 rna ? GO:0000027 ... P0C0W9 38030725
    58 8cku:O (3.11) BS01 rna ? GO:0002181 ... P14120 38030725
    59 8cku:OO (3.11) BS01 rna ? GO:0002181 ... Q12690 38030725
    60 8cku:P (3.11) BS01 rna ? GO:0002181 ... P0C2H8 38030725
    61 8cku:PP (3.11) BS01 rna ? GO:0000027 ... P36105 38030725
    62 8cku:Q (3.11) BS01 rna ? GO:0002181 ... P38061 38030725
    63 8cku:QQ (3.11) BS01 rna ? GO:0002181 ... P05748 38030725
    64 8cku:QQ (3.11) BS02 rna ? GO:0002181 ... P05748 38030725
    65 8cku:R (3.11) BS01 rna ? GO:0000027 ... P05744 38030725
    66 8cku:S (3.11) BS01 rna ? GO:0002181 ... P87262 38030725
    67 8cku:S (3.11) BS02 ZN ? GO:0002181 ... P87262 38030725
    68 8cku:T (3.11) BS01 rna ? GO:0000463 ... P0CX84 38030725
    69 8cku:T (3.11) BS02 rna ? GO:0000463 ... P0CX84 38030725
    70 8cku:U (3.11) BS01 rna ? GO:0002181 ... P05745 38030725
    71 8cku:V (3.11) BS01 rna ? GO:0000448 ... P49166 38030725
    72 8cku:V (3.11) BS02 rna ? GO:0000448 ... P49166 38030725
    73 8cku:V (3.11) BS03 ZN ? GO:0000448 ... P49166 38030725
    74 8cku:W (3.11) BS01 rna ? GO:0002181 ... P49167 38030725
    75 8cku:X (3.11) BS01 rna ? GO:0002181 ... P04650 38030725
    76 8cku:X (3.11) BS02 rna ? GO:0002181 ... P04650 38030725
    77 8cku:Y (3.11) BS01 rna ? GO:0000027 ... P0CH08 38030725
    78 8cku:Y (3.11) BS02 ZN ? GO:0000027 ... P0CH08 38030725
    79 8cku:a (3.11) BS01 rna ? GO:0002181 ... P0CX27 38030725
    80 8cku:a (3.11) BS02 rna ? GO:0002181 ... P0CX27 38030725
    81 8cku:a (3.11) BS03 ZN ? GO:0002181 ... P0CX27 38030725
    82 8cku:b (3.11) BS01 rna ? GO:0002181 ... P0CX25 38030725
    83 8cku:b (3.11) BS02 rna ? GO:0002181 ... P0CX25 38030725
    84 8cku:b (3.11) BS03 ZN ? GO:0002181 ... P0CX25 38030725
    85 8cku:d (3.11) BS01 rna ? GO:0000028 ... P32905 38030725
    86 8cku:e (3.11) BS01 rna ? GO:0000462 ... P33442 38030725
    87 8cku:e (3.11) BS02 rna ? GO:0000462 ... P33442 38030725
    88 8cku:f (3.11) BS01 rna ? GO:0000054 ... P25443 38030725
    89 8cku:g (3.11) BS01 rna ? GO:0003723 ... N/A 38030725
    90 8cku:h (3.11) BS01 rna ? GO:0002181 ... P0CX35 38030725
    91 8cku:i (3.11) BS01 rna ? GO:0000028 ... P26783 38030725
    92 8cku:j (3.11) BS01 rna ? GO:0000462 ... P0CX37 38030725
    93 8cku:k (3.11) BS01 rna ? GO:0002181 ... P26786 38030725
    94 8cku:l (3.11) BS01 rna ? GO:0000462 ... P0CX39 38030725
    95 8cku:m (3.11) BS01 rna ? GO:0000462 ... O13516 38030725
    96 8cku:n (3.11) BS01 rna ? GO:0000054 ... Q08745 38030725
    97 8cku:o (3.11) BS01 rna ? GO:0000028 ... P0CX47 38030725
    98 8cku:p (3.11) BS01 rna ? GO:0000462 ... P05756 38030725
    99 8cku:q (3.11) BS01 rna ? GO:0000028 ... P06367 38030725
    100 8cku:q (3.11) BS02 rna ? GO:0000028 ... P06367 38030725
    101 8cku:r (3.11) BS01 rna ? GO:0000028 ... Q01855 38030725
    102 8cku:s (3.11) BS01 rna ? GO:0000462 ... P0CX51 38030725
    103 8cku:t (3.11) BS01 rna ? GO:0000028 ... P02407 38030725
    104 8cku:u (3.11) BS01 rna ? GO:0000054 ... P0CX55 38030725
    105 8cku:v (3.11) BS01 rna ? GO:0000028 ... P07280 38030725
    106 8cku:w (3.11) BS01 rna ? GO:0003723 ... N/A 38030725
    107 8cku:x (3.11) BS01 rna ? GO:0000447 ... P0C0V8 38030725
    108 8cku:y (3.11) BS01 rna ? GO:0002181 ... P0C0W1 38030725
    109 8cku:z (3.11) BS01 rna ? GO:0000462 ... P0CX29 38030725
    110 8cku:z (3.11) BS02 rna ? GO:0000462 ... P0CX29 38030725
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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