Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 107 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ceh:0 (2.05) BS01 rna ? GO:0000462 ... P0CX31 38030725
    2 8ceh:1 (2.05) BS01 rna ? GO:0002181 ... Q3E792 38030725
    3 8ceh:2 (2.05) BS01 rna ? GO:0003735 ... N/A 38030725
    4 8ceh:2 (2.05) BS02 ZN ? GO:0003735 ... N/A 38030725
    5 8ceh:3 (2.05) BS01 rna ? GO:0000028 ... P35997 38030725
    6 8ceh:4 (2.05) BS01 rna ? GO:0000028 ... Q3E7X9 38030725
    7 8ceh:5 (2.05) BS01 rna ? GO:0003735 ... N/A 38030725
    8 8ceh:5 (2.05) BS02 ZN ? GO:0003735 ... N/A 38030725
    9 8ceh:6 (2.05) BS01 rna ? GO:0002181 ... P0CX33 38030725
    10 8ceh:7 (2.05) BS01 rna ? GO:0001965 ... P38011 38030725
    11 8ceh:8 (2.05) BS01 rna ? GO:0003735 ... N/A 38030725
    12 8ceh:A (2.05) BS01 rna ? GO:0000470 ... P26784 38030725
    13 8ceh:Aa (2.05) BS01 rna ? GO:0003924 ... N/A 38030725
    14 8ceh:Aa (2.05) BS02 rna ? GO:0003924 ... N/A 38030725
    15 8ceh:Aa (2.05) BS03 rna ? GO:0003924 ... N/A 38030725
    16 8ceh:Aa (2.05) BS04 GDP ? GO:0003924 ... N/A 38030725
    17 8ceh:Aa (2.05) BS05 SO1 ? GO:0003924 ... N/A 38030725
    18 8ceh:B (2.05) BS01 rna ? GO:0000448 ... P05740 38030725
    19 8ceh:B (2.05) BS02 rna ? GO:0000448 ... P05740 38030725
    20 8ceh:C (2.05) BS01 rna ? GO:0002181 ... P0CX49 38030725
    21 8ceh:D (2.05) BS01 rna ? GO:0002181 ... P0CX82 38030725
    22 8ceh:D (2.05) BS02 rna ? GO:0002181 ... P0CX82 38030725
    23 8ceh:DD (2.05) BS01 rna ? GO:0000027 ... P05317 38030725
    24 8ceh:E (2.05) BS01 rna ? GO:0002181 ... P0CX23 38030725
    25 8ceh:E (2.05) BS02 rna ? GO:0002181 ... P0CX23 38030725
    26 8ceh:EE (2.05) BS01 rna ? GO:0002181 ... P0CX45 38030725
    27 8ceh:EE (2.05) BS02 rna ? GO:0002181 ... P0CX45 38030725
    28 8ceh:Ee (2.05) BS01 rna ? GO:0000027 ... P0CX53 38030725
    29 8ceh:F (2.05) BS01 rna ? GO:0002181 ... Q02753 38030725
    30 8ceh:F (2.05) BS02 rna ? GO:0002181 ... Q02753 38030725
    31 8ceh:FF (2.05) BS01 rna ? GO:0000027 ... P14126 38030725
    32 8ceh:G (2.05) BS01 rna ? GO:0002181 ... P05749 38030725
    33 8ceh:GG (2.05) BS01 rna ? GO:0002181 ... P10664 38030725
    34 8ceh:GG (2.05) BS02 rna ? GO:0002181 ... P10664 38030725
    35 8ceh:H (2.05) BS01 rna ? GO:0002181 ... P0CX41 38030725
    36 8ceh:HH (2.05) BS01 rna ? GO:0000027 ... P26321 38030725
    37 8ceh:HH (2.05) BS02 rna ? GO:0000027 ... P26321 38030725
    38 8ceh:I (2.05) BS01 rna ? GO:0002181 ... P04449 38030725
    39 8ceh:II (2.05) BS01 rna ? GO:0000027 ... Q02326 38030725
    40 8ceh:J (2.05) BS01 rna ? GO:0000027 ... P04456 38030725
    41 8ceh:J (2.05) BS02 rna ? GO:0000027 ... P04456 38030725
    42 8ceh:JJ (2.05) BS01 rna ? GO:0000463 ... P05737 38030725
    43 8ceh:JJ (2.05) BS02 rna ? GO:0000463 ... P05737 38030725
    44 8ceh:K (2.05) BS01 rna ? GO:0002181 ... P05743 38030725
    45 8ceh:K (2.05) BS02 rna ? GO:0002181 ... P05743 38030725
    46 8ceh:KK (2.05) BS01 rna ? GO:0000470 ... P17076 38030725
    47 8ceh:KK (2.05) BS02 rna ? GO:0000470 ... P17076 38030725
    48 8ceh:L (2.05) BS01 rna ? GO:0002181 ... P0C2H6 38030725
    49 8ceh:LL (2.05) BS01 rna ? GO:0003735 ... N/A 38030725
    50 8ceh:M (2.05) BS01 rna ? GO:0002181 ... P02406 38030725
    51 8ceh:MM (2.05) BS01 rna ? GO:0000027 ... P41805 38030725
    52 8ceh:MM (2.05) BS02 rna ? GO:0000027 ... P41805 38030725
    53 8ceh:N (2.05) BS01 rna ? GO:0002181 ... P05747 38030725
    54 8ceh:NN (2.05) BS01 rna ? GO:0000027 ... P0C0W9 38030725
    55 8ceh:NN (2.05) BS02 rna ? GO:0000027 ... P0C0W9 38030725
    56 8ceh:NN (2.05) BS03 rna ? GO:0000027 ... P0C0W9 38030725
    57 8ceh:O (2.05) BS01 rna ? GO:0002181 ... P14120 38030725
    58 8ceh:OO (2.05) BS01 rna ? GO:0002181 ... Q12690 38030725
    59 8ceh:OO (2.05) BS02 rna ? GO:0002181 ... Q12690 38030725
    60 8ceh:P (2.05) BS01 rna ? GO:0002181 ... P0C2H8 38030725
    61 8ceh:PP (2.05) BS01 rna ? GO:0000027 ... P36105 38030725
    62 8ceh:Q (2.05) BS01 rna ? GO:0002181 ... P38061 38030725
    63 8ceh:QQ (2.05) BS01 rna ? GO:0002181 ... P05748 38030725
    64 8ceh:QQ (2.05) BS02 rna ? GO:0002181 ... P05748 38030725
    65 8ceh:R (2.05) BS01 rna ? GO:0000027 ... P05744 38030725
    66 8ceh:S (2.05) BS01 rna ? GO:0002181 ... P87262 38030725
    67 8ceh:S (2.05) BS02 ZN ? GO:0002181 ... P87262 38030725
    68 8ceh:T (2.05) BS01 rna ? GO:0000463 ... P0CX84 38030725
    69 8ceh:T (2.05) BS02 rna ? GO:0000463 ... P0CX84 38030725
    70 8ceh:U (2.05) BS01 rna ? GO:0002181 ... P05745 38030725
    71 8ceh:V (2.05) BS01 rna ? GO:0000448 ... P49166 38030725
    72 8ceh:V (2.05) BS02 rna ? GO:0000448 ... P49166 38030725
    73 8ceh:V (2.05) BS03 ZN ? GO:0000448 ... P49166 38030725
    74 8ceh:W (2.05) BS01 rna ? GO:0002181 ... P49167 38030725
    75 8ceh:X (2.05) BS01 rna ? GO:0002181 ... P04650 38030725
    76 8ceh:X (2.05) BS02 rna ? GO:0002181 ... P04650 38030725
    77 8ceh:Y (2.05) BS01 rna ? GO:0000027 ... P0CH08 38030725
    78 8ceh:Y (2.05) BS02 ZN ? GO:0000027 ... P0CH08 38030725
    79 8ceh:a (2.05) BS01 rna ? GO:0002181 ... P0CX27 38030725
    80 8ceh:a (2.05) BS02 rna ? GO:0002181 ... P0CX27 38030725
    81 8ceh:a (2.05) BS03 ZN ? GO:0002181 ... P0CX27 38030725
    82 8ceh:b (2.05) BS01 rna ? GO:0002181 ... P0CX25 38030725
    83 8ceh:b (2.05) BS02 ZN ? GO:0002181 ... P0CX25 38030725
    84 8ceh:d (2.05) BS01 rna ? GO:0000028 ... P32905 38030725
    85 8ceh:e (2.05) BS01 rna ? GO:0000462 ... P33442 38030725
    86 8ceh:f (2.05) BS01 rna ? GO:0000054 ... P25443 38030725
    87 8ceh:g (2.05) BS01 rna ? GO:0003723 ... N/A 38030725
    88 8ceh:h (2.05) BS01 rna ? GO:0002181 ... P0CX35 38030725
    89 8ceh:i (2.05) BS01 rna ? GO:0000028 ... P26783 38030725
    90 8ceh:j (2.05) BS01 rna ? GO:0000462 ... P0CX37 38030725
    91 8ceh:k (2.05) BS01 rna ? GO:0002181 ... P26786 38030725
    92 8ceh:l (2.05) BS01 rna ? GO:0000462 ... P0CX40 38030725
    93 8ceh:l (2.05) BS02 rna ? GO:0000462 ... P0CX40 38030725
    94 8ceh:m (2.05) BS01 rna ? GO:0000462 ... O13516 38030725
    95 8ceh:n (2.05) BS01 rna ? GO:0000054 ... Q08745 38030725
    96 8ceh:o (2.05) BS01 rna ? GO:0000028 ... P0CX47 38030725
    97 8ceh:p (2.05) BS01 rna ? GO:0000462 ... P05756 38030725
    98 8ceh:p (2.05) BS02 rna ? GO:0000462 ... P05756 38030725
    99 8ceh:q (2.05) BS01 rna ? GO:0000028 ... P06367 38030725
    100 8ceh:r (2.05) BS01 rna ? GO:0000028 ... Q01855 38030725
    101 8ceh:s (2.05) BS01 rna ? GO:0000462 ... P0CX51 38030725
    102 8ceh:t (2.05) BS01 rna ? GO:0000028 ... P02407 38030725
    103 8ceh:u (2.05) BS01 rna ? GO:0000054 ... P0CX55 38030725
    104 8ceh:v (2.05) BS01 rna ? GO:0000028 ... P07280 38030725
    105 8ceh:w (2.05) BS01 rna ? GO:0003723 ... N/A 38030725
    106 8ceh:y (2.05) BS01 rna ? GO:0002181 ... P0C0W1 38030725
    107 8ceh:z (2.05) BS01 rna ? GO:0000462 ... P0CX29 38030725
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417