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BioLiP
Download all results in tab-seperated text for 111 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8cdr:0 (2.04) BS01 rna ? GO:0000462 ... P0CX31 38030725
    2 8cdr:1 (2.04) BS01 rna ? GO:0002181 ... Q3E792 38030725
    3 8cdr:2 (2.04) BS01 rna ? GO:0000054 ... P39938 38030725
    4 8cdr:2 (2.04) BS02 ZN ? GO:0000054 ... P39938 38030725
    5 8cdr:3 (2.04) BS01 rna ? GO:0000028 ... P35997 38030725
    6 8cdr:4 (2.04) BS01 rna ? GO:0000028 ... Q3E7X9 38030725
    7 8cdr:5 (2.04) BS01 rna ? GO:0002181 ... P41057 38030725
    8 8cdr:5 (2.04) BS02 ZN ? GO:0002181 ... P41057 38030725
    9 8cdr:6 (2.04) BS01 rna ? GO:0002181 ... P0CX33 38030725
    10 8cdr:7 (2.04) BS01 rna ? GO:0001965 ... P38011 38030725
    11 8cdr:8 (2.04) BS01 rna ? GO:0000028 ... P05759 38030725
    12 8cdr:8 (2.04) BS02 ZN ? GO:0000028 ... P05759 38030725
    13 8cdr:A (2.04) BS01 rna ? GO:0000470 ... P26784 38030725
    14 8cdr:Aa (2.04) BS01 rna 3.6.5.- GO:0003746 ... P32324 38030725
    15 8cdr:Aa (2.04) BS02 rna 3.6.5.- GO:0003746 ... P32324 38030725
    16 8cdr:Aa (2.04) BS03 rna 3.6.5.- GO:0003746 ... P32324 38030725
    17 8cdr:Aa (2.04) BS04 GDP 3.6.5.- GO:0003746 ... P32324 38030725
    18 8cdr:Aa (2.04) BS05 SO1 3.6.5.- GO:0003746 ... P32324 38030725
    19 8cdr:B (2.04) BS01 rna ? GO:0000448 ... P05740 38030725
    20 8cdr:B (2.04) BS02 rna ? GO:0000448 ... P05740 38030725
    21 8cdr:C (2.04) BS01 rna ? GO:0002181 ... P0CX49 38030725
    22 8cdr:D (2.04) BS01 rna ? GO:0002181 ... P0CX82 38030725
    23 8cdr:D (2.04) BS02 rna ? GO:0002181 ... P0CX82 38030725
    24 8cdr:DD (2.04) BS01 rna ? GO:0000027 ... P05317 38030725
    25 8cdr:E (2.04) BS01 rna ? GO:0002181 ... P0CX23 38030725
    26 8cdr:E (2.04) BS02 rna ? GO:0002181 ... P0CX23 38030725
    27 8cdr:EE (2.04) BS01 rna ? GO:0002181 ... P0CX45 38030725
    28 8cdr:EE (2.04) BS02 rna ? GO:0002181 ... P0CX45 38030725
    29 8cdr:EE (2.04) BS03 MG ? GO:0002181 ... P0CX45 38030725
    30 8cdr:Ee (2.04) BS01 rna ? GO:0000027 ... P0CX53 38030725
    31 8cdr:F (2.04) BS01 rna ? GO:0002181 ... Q02753 38030725
    32 8cdr:F (2.04) BS02 rna ? GO:0002181 ... Q02753 38030725
    33 8cdr:FF (2.04) BS01 rna ? GO:0000027 ... P14126 38030725
    34 8cdr:G (2.04) BS01 rna ? GO:0002181 ... P05749 38030725
    35 8cdr:GG (2.04) BS01 rna ? GO:0002181 ... P10664 38030725
    36 8cdr:GG (2.04) BS02 rna ? GO:0002181 ... P10664 38030725
    37 8cdr:H (2.04) BS01 rna ? GO:0002181 ... P0CX41 38030725
    38 8cdr:H (2.04) BS02 rna ? GO:0002181 ... P0CX41 38030725
    39 8cdr:HH (2.04) BS01 rna ? GO:0000027 ... P26321 38030725
    40 8cdr:HH (2.04) BS02 rna ? GO:0000027 ... P26321 38030725
    41 8cdr:I (2.04) BS01 rna ? GO:0002181 ... P04449 38030725
    42 8cdr:II (2.04) BS01 rna ? GO:0000027 ... Q02326 38030725
    43 8cdr:J (2.04) BS01 rna ? GO:0000027 ... P04456 38030725
    44 8cdr:J (2.04) BS02 rna ? GO:0000027 ... P04456 38030725
    45 8cdr:JJ (2.04) BS01 rna ? GO:0000463 ... P05737 38030725
    46 8cdr:JJ (2.04) BS02 rna ? GO:0000463 ... P05737 38030725
    47 8cdr:K (2.04) BS01 rna ? GO:0002181 ... P05743 38030725
    48 8cdr:K (2.04) BS02 rna ? GO:0002181 ... P05743 38030725
    49 8cdr:KK (2.04) BS01 rna ? GO:0000470 ... P17076 38030725
    50 8cdr:KK (2.04) BS02 rna ? GO:0000470 ... P17076 38030725
    51 8cdr:L (2.04) BS01 rna ? GO:0002181 ... P0C2H6 38030725
    52 8cdr:LL (2.04) BS01 rna ? GO:0002181 ... P05738 38030725
    53 8cdr:M (2.04) BS01 rna ? GO:0002181 ... P02406 38030725
    54 8cdr:MM (2.04) BS01 rna ? GO:0000027 ... P41805 38030725
    55 8cdr:MM (2.04) BS02 rna ? GO:0000027 ... P41805 38030725
    56 8cdr:MM (2.04) BS03 rna ? GO:0000027 ... P41805 38030725
    57 8cdr:N (2.04) BS01 rna ? GO:0002181 ... P05747 38030725
    58 8cdr:NN (2.04) BS01 rna ? GO:0000027 ... P0C0W9 38030725
    59 8cdr:NN (2.04) BS02 rna ? GO:0000027 ... P0C0W9 38030725
    60 8cdr:NN (2.04) BS03 rna ? GO:0000027 ... P0C0W9 38030725
    61 8cdr:O (2.04) BS01 rna ? GO:0002181 ... P14120 38030725
    62 8cdr:OO (2.04) BS01 rna ? GO:0002181 ... Q12690 38030725
    63 8cdr:OO (2.04) BS02 rna ? GO:0002181 ... Q12690 38030725
    64 8cdr:P (2.04) BS01 rna ? GO:0002181 ... P0C2H8 38030725
    65 8cdr:PP (2.04) BS01 rna ? GO:0000027 ... P36105 38030725
    66 8cdr:Q (2.04) BS01 rna ? GO:0002181 ... P38061 38030725
    67 8cdr:QQ (2.04) BS01 rna ? GO:0002181 ... P05748 38030725
    68 8cdr:QQ (2.04) BS02 rna ? GO:0002181 ... P05748 38030725
    69 8cdr:R (2.04) BS01 rna ? GO:0000027 ... P05744 38030725
    70 8cdr:S (2.04) BS01 rna ? GO:0002181 ... P87262 38030725
    71 8cdr:S (2.04) BS02 ZN ? GO:0002181 ... P87262 38030725
    72 8cdr:T (2.04) BS01 rna ? GO:0000463 ... P0CX84 38030725
    73 8cdr:T (2.04) BS02 rna ? GO:0000463 ... P0CX84 38030725
    74 8cdr:U (2.04) BS01 rna ? GO:0002181 ... P05745 38030725
    75 8cdr:V (2.04) BS01 rna ? GO:0000448 ... P49166 38030725
    76 8cdr:V (2.04) BS02 rna ? GO:0000448 ... P49166 38030725
    77 8cdr:V (2.04) BS03 ZN ? GO:0000448 ... P49166 38030725
    78 8cdr:W (2.04) BS01 rna ? GO:0002181 ... P49167 38030725
    79 8cdr:X (2.04) BS01 rna ? GO:0002181 ... P04650 38030725
    80 8cdr:X (2.04) BS02 rna ? GO:0002181 ... P04650 38030725
    81 8cdr:Y (2.04) BS01 rna ? GO:0000027 ... P0CH08 38030725
    82 8cdr:Y (2.04) BS02 ZN ? GO:0000027 ... P0CH08 38030725
    83 8cdr:a (2.04) BS01 rna ? GO:0002181 ... P0CX27 38030725
    84 8cdr:a (2.04) BS02 rna ? GO:0002181 ... P0CX27 38030725
    85 8cdr:a (2.04) BS03 ZN ? GO:0002181 ... P0CX27 38030725
    86 8cdr:b (2.04) BS01 rna ? GO:0002181 ... P0CX25 38030725
    87 8cdr:b (2.04) BS02 ZN ? GO:0002181 ... P0CX25 38030725
    88 8cdr:d (2.04) BS01 rna ? GO:0000028 ... P32905 38030725
    89 8cdr:e (2.04) BS01 rna ? GO:0000462 ... P33442 38030725
    90 8cdr:f (2.04) BS01 rna ? GO:0000054 ... P25443 38030725
    91 8cdr:g (2.04) BS01 rna ? GO:0000054 ... P05750 38030725
    92 8cdr:h (2.04) BS01 rna ? GO:0002181 ... P0CX35 38030725
    93 8cdr:i (2.04) BS01 rna ? GO:0000028 ... P26783 38030725
    94 8cdr:j (2.04) BS01 rna ? GO:0000462 ... P0CX37 38030725
    95 8cdr:k (2.04) BS01 rna ? GO:0002181 ... P26786 38030725
    96 8cdr:l (2.04) BS01 rna ? GO:0000462 ... P0CX40 38030725
    97 8cdr:l (2.04) BS02 rna ? GO:0000462 ... P0CX40 38030725
    98 8cdr:m (2.04) BS01 rna ? GO:0000462 ... O13516 38030725
    99 8cdr:n (2.04) BS01 rna ? GO:0000054 ... Q08745 38030725
    100 8cdr:o (2.04) BS01 rna ? GO:0000028 ... P0CX47 38030725
    101 8cdr:p (2.04) BS01 rna ? GO:0000462 ... P05756 38030725
    102 8cdr:p (2.04) BS02 rna ? GO:0000462 ... P05756 38030725
    103 8cdr:q (2.04) BS01 rna ? GO:0000028 ... P06367 38030725
    104 8cdr:r (2.04) BS01 rna ? GO:0000028 ... Q01855 38030725
    105 8cdr:s (2.04) BS01 rna ? GO:0000462 ... P0CX51 38030725
    106 8cdr:t (2.04) BS01 rna ? GO:0000028 ... P02407 38030725
    107 8cdr:u (2.04) BS01 rna ? GO:0000054 ... P0CX55 38030725
    108 8cdr:v (2.04) BS01 rna ? GO:0000028 ... P07280 38030725
    109 8cdr:w (2.04) BS01 rna ? GO:0000462 ... P38701 38030725
    110 8cdr:y (2.04) BS01 rna ? GO:0002181 ... P0C0W1 38030725
    111 8cdr:z (2.04) BS01 rna ? GO:0000462 ... P0CX29 38030725
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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