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BioLiP
Download all results in tab-seperated text for 49 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8c5c:N (5.3) BS01 MG 3.6.5.- GO:0000226 ... P81947 36541084
    2 8c5c:N (5.3) BS02 GTP 3.6.5.- GO:0000226 ... P81947 36541084
    3 8c5c:O (5.3) BS01 MG 3.6.5.- GO:0000226 ... P81947 36541084
    4 8c5c:O (5.3) BS02 GTP 3.6.5.- GO:0000226 ... P81947 36541084
    5 8c5c:P (5.3) BS01 GTP 3.6.5.- GO:0000226 ... P81947 36541084
    6 8c5c:Q (5.3) BS01 MG 3.6.5.- GO:0000226 ... P81947 36541084
    7 8c5c:Q (5.3) BS02 GTP 3.6.5.- GO:0000226 ... P81947 36541084
    8 8c5c:R (5.3) BS01 MG 3.6.5.- GO:0000226 ... P81947 36541084
    9 8c5c:R (5.3) BS02 GTP 3.6.5.- GO:0000226 ... P81947 36541084
    10 8c5c:S (5.3) BS01 GTP 3.6.5.- GO:0000226 ... P81947 36541084
    11 8c5c:T (5.3) BS01 GTP 3.6.5.- GO:0000226 ... P81947 36541084
    12 8c5c:U (5.3) BS01 MG 3.6.5.- GO:0000226 ... P81947 36541084
    13 8c5c:U (5.3) BS02 GTP 3.6.5.- GO:0000226 ... P81947 36541084
    14 8c5c:V (5.3) BS01 MG 3.6.5.- GO:0000226 ... P81947 36541084
    15 8c5c:V (5.3) BS02 GTP 3.6.5.- GO:0000226 ... P81947 36541084
    16 8c5c:W (5.3) BS01 MG 3.6.5.- GO:0000226 ... P81947 36541084
    17 8c5c:W (5.3) BS02 GTP 3.6.5.- GO:0000226 ... P81947 36541084
    18 8c5c:X (5.3) BS01 MG 3.6.5.- GO:0000226 ... P81947 36541084
    19 8c5c:X (5.3) BS02 GTP 3.6.5.- GO:0000226 ... P81947 36541084
    20 8c5c:Y (5.3) BS01 MG 3.6.5.- GO:0000226 ... P81947 36541084
    21 8c5c:Y (5.3) BS02 GTP 3.6.5.- GO:0000226 ... P81947 36541084
    22 8c5c:Z (5.3) BS01 MG 3.6.5.- GO:0000226 ... P81947 36541084
    23 8c5c:Z (5.3) BS02 GTP 3.6.5.- GO:0000226 ... P81947 36541084
    24 8c5c:a (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    25 8c5c:a (5.3) BS02 GDP ? GO:0003924 ... A0A452DIL8 36541084
    26 8c5c:b (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    27 8c5c:b (5.3) BS02 GDP ? GO:0003924 ... A0A452DIL8 36541084
    28 8c5c:c (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    29 8c5c:c (5.3) BS02 GDP ? GO:0003924 ... A0A452DIL8 36541084
    30 8c5c:d (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    31 8c5c:d (5.3) BS02 GDP ? GO:0003924 ... A0A452DIL8 36541084
    32 8c5c:e (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    33 8c5c:e (5.3) BS02 GDP ? GO:0003924 ... A0A452DIL8 36541084
    34 8c5c:f (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    35 8c5c:f (5.3) BS02 GDP ? GO:0003924 ... A0A452DIL8 36541084
    36 8c5c:g (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    37 8c5c:g (5.3) BS02 GDP ? GO:0003924 ... A0A452DIL8 36541084
    38 8c5c:h (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    39 8c5c:h (5.3) BS02 GDP ? GO:0003924 ... A0A452DIL8 36541084
    40 8c5c:i (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    41 8c5c:i (5.3) BS02 GDP ? GO:0003924 ... A0A452DIL8 36541084
    42 8c5c:j (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    43 8c5c:j (5.3) BS02 GDP ? GO:0003924 ... A0A452DIL8 36541084
    44 8c5c:k (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    45 8c5c:k (5.3) BS02 GDP ? GO:0003924 ... A0A452DIL8 36541084
    46 8c5c:l (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    47 8c5c:l (5.3) BS02 GDP ? GO:0003924 ... A0A452DIL8 36541084
    48 8c5c:m (5.3) BS01 TA1 ? GO:0003924 ... A0A452DIL8 36541084
    49 8c5c:m (5.3) BS02 GDP ? GO:0003924 ... A0A452DIL8 36541084
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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