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BioLiP
Download all results in tab-seperated text for 89 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8brm:LA (3.33) BS01 rna ? GO:0002181 ... E2RTN4 36912103
    2 8brm:LA (3.33) BS02 rna ? GO:0002181 ... E2RTN4 36912103
    3 8brm:LB (3.33) BS01 rna ? GO:0003723 ... A8BRZ3 36912103
    4 8brm:LC (3.33) BS01 rna ? GO:0003723 ... A8B7H8 36912103
    5 8brm:LC (3.33) BS02 rna ? GO:0003723 ... A8B7H8 36912103
    6 8brm:LF (3.33) BS01 rna ? GO:0000027 ... E2RU47 36912103
    7 8brm:LF (3.33) BS02 rna ? GO:0000027 ... E2RU47 36912103
    8 8brm:LG (3.33) BS01 rna ? GO:0003735 ... A0A644EZB9 36912103
    9 8brm:LG (3.33) BS02 rna ? GO:0003735 ... A0A644EZB9 36912103
    10 8brm:LH (3.33) BS01 rna ? GO:0000463 ... A8BRY6 36912103
    11 8brm:LH (3.33) BS02 rna ? GO:0000463 ... A8BRY6 36912103
    12 8brm:LI (3.33) BS01 rna ? GO:0000470 ... A8BLL7 36912103
    13 8brm:LI (3.33) BS02 rna ? GO:0000470 ... A8BLL7 36912103
    14 8brm:LJ (3.33) BS01 rna ? GO:0002181 ... A8BNT5 36912103
    15 8brm:LK (3.33) BS01 rna ? GO:0000027 ... A8BM86 36912103
    16 8brm:LK (3.33) BS02 rna ? GO:0000027 ... A8BM86 36912103
    17 8brm:LL (3.33) BS01 rna ? GO:0003723 ... A8BI95 36912103
    18 8brm:LL (3.33) BS02 rna ? GO:0003723 ... A8BI95 36912103
    19 8brm:LM (3.33) BS01 rna ? GO:0003735 ... A8B6M8 36912103
    20 8brm:LM (3.33) BS02 rna ? GO:0003735 ... A8B6M8 36912103
    21 8brm:LN (3.33) BS01 rna ? GO:0003723 ... A8B4F8 36912103
    22 8brm:LO (3.33) BS01 rna ? GO:0002181 ... A8B8Z6 36912103
    23 8brm:LO (3.33) BS02 rna ? GO:0002181 ... A8B8Z6 36912103
    24 8brm:LP (3.33) BS01 rna ? GO:0003729 ... A8BU75 36912103
    25 8brm:LQ (3.33) BS01 rna ? GO:0002181 ... A8BE76 36912103
    26 8brm:LQ (3.33) BS02 rna ? GO:0002181 ... A8BE76 36912103
    27 8brm:LR (3.33) BS01 rna ? GO:0003723 ... A8B4T7 36912103
    28 8brm:LS (3.33) BS01 rna ? GO:0003723 ... A8BH61 36912103
    29 8brm:LS (3.33) BS02 rna ? GO:0003723 ... A8BH61 36912103
    30 8brm:LT (3.33) BS01 rna ? GO:0003735 ... A0A644FBU1 36912103
    31 8brm:LT (3.33) BS02 rna ? GO:0003735 ... A0A644FBU1 36912103
    32 8brm:LU (3.33) BS01 rna ? GO:0003735 ... A8B2Q4 36912103
    33 8brm:LU (3.33) BS02 rna ? GO:0003735 ... A8B2Q4 36912103
    34 8brm:LV (3.33) BS01 rna ? GO:0002181 ... A0A644FC41 36912103
    35 8brm:LW (3.33) BS01 rna ? GO:0003735 ... A8BS37 36912103
    36 8brm:LX (3.33) BS01 rna ? GO:0005730 ... A8B7P2 36912103
    37 8brm:LY (3.33) BS01 rna ? GO:0000027 ... A8BMP6 36912103
    38 8brm:LY (3.33) BS02 rna ? GO:0000027 ... A8BMP6 36912103
    39 8brm:LZ (3.33) BS01 rna ? GO:0002181 ... A8BFT3 36912103
    40 8brm:LZ (3.33) BS02 rna ? GO:0002181 ... A8BFT3 36912103
    41 8brm:La (3.33) BS01 rna ? GO:0003735 ... A8B1T3 36912103
    42 8brm:Lb (3.33) BS01 rna ? GO:0003735 ... A8BZ78 36912103
    43 8brm:Lc (3.33) BS01 rna ? GO:0002181 ... A8BYY2 36912103
    44 8brm:Ld (3.33) BS01 rna ? GO:0003723 ... A8B5N7 36912103
    45 8brm:Le (3.33) BS01 rna ? GO:0002181 ... A8BMP3 36912103
    46 8brm:Lf (3.33) BS01 rna ? GO:0003735 ... A8BMD9 36912103
    47 8brm:Lg (3.33) BS01 rna ? GO:0002181 ... A8BKK5 36912103
    48 8brm:Lh (3.33) BS01 rna ? GO:0003735 ... A8BMF7 36912103
    49 8brm:Li (3.33) BS01 rna ? GO:0000463 ... A0A644FBK5 36912103
    50 8brm:Li (3.33) BS02 rna ? GO:0000463 ... A0A644FBK5 36912103
    51 8brm:Lj (3.33) BS01 rna ? GO:0002181 ... A8BYA6 36912103
    52 8brm:Lk (3.33) BS01 rna ? GO:0003723 ... A8BLV7 36912103
    53 8brm:Lk (3.33) BS02 rna ? GO:0003723 ... A8BLV7 36912103
    54 8brm:Ll (3.33) BS01 rna ? GO:0003735 ... A8B481 36912103
    55 8brm:Ln (3.33) BS01 rna ? GO:0003723 ... A0A644FB74 36912103
    56 8brm:Lp (3.33) BS01 rna ? GO:0003735 ... A8BQU8 36912103
    57 8brm:Lq (3.33) BS01 rna ? GO:0003735 ... A8BN26 36912103
    58 8brm:Ls (3.33) BS01 rna ? GO:0003735 ... A8BXE1 36912103
    59 8brm:SA (3.33) BS01 rna ? GO:0000028 ... A8BE86 36912103
    60 8brm:SB (3.33) BS01 rna ? GO:0003723 ... A8BMZ1 36912103
    61 8brm:SC (3.33) BS01 rna ? GO:0003723 ... A8B8Z2 36912103
    62 8brm:SD (3.33) BS01 rna ? GO:0003735 ... A8BS79 36912103
    63 8brm:SE (3.33) BS01 rna ? GO:0003723 ... A8BFE3 36912103
    64 8brm:SF (3.33) BS01 rna ? GO:0000028 ... A8BZD3 36912103
    65 8brm:SG (3.33) BS01 rna ? GO:0003735 ... A8B6L8 36912103
    66 8brm:SH (3.33) BS01 rna ? GO:0003735 ... A8BT38 36912103
    67 8brm:SI (3.33) BS01 rna ? GO:0000462 ... A8B252 36912103
    68 8brm:SI (3.33) BS02 rna ? GO:0000462 ... A8B252 36912103
    69 8brm:SJ (3.33) BS01 rna ? GO:0003735 ... E2RU77 36912103
    70 8brm:SK (3.33) BS01 rna ? GO:0003723 ... A8BKS8 36912103
    71 8brm:SL (3.33) BS01 rna ? GO:0003723 ... A8BRX3 36912103
    72 8brm:SM (3.33) BS01 rna ? GO:0003735 ... A8BVU0 36912103
    73 8brm:SO (3.33) BS01 rna ? GO:0003735 ... A8BS96 36912103
    74 8brm:SP (3.33) BS01 rna ? GO:0003735 ... A8BE02 36912103
    75 8brm:SQ (3.33) BS01 rna ? GO:0000028 ... E2RU83 36912103
    76 8brm:SR (3.33) BS01 rna ? GO:0000028 ... A8BBP3 36912103
    77 8brm:ST (3.33) BS01 rna ? GO:0000462 ... A8BKC6 36912103
    78 8brm:SU (3.33) BS01 rna ? GO:0003735 ... A8BRG5 36912103
    79 8brm:SV (3.33) BS01 rna ? GO:0003676 ... A8BZ58 36912103
    80 8brm:SV (3.33) BS02 rna ? GO:0003676 ... A8BZ58 36912103
    81 8brm:SW (3.33) BS01 rna ? GO:0000028 ... A0A644F964 36912103
    82 8brm:SX (3.33) BS01 rna ? GO:0003735 ... A8B4G0 36912103
    83 8brm:Sb (3.33) BS01 rna ? GO:0003735 ... A8B593 36912103
    84 8brm:Sc (3.33) BS01 rna ? GO:0003735 ... A8B8H7 36912103
    85 8brm:Sd (3.33) BS01 rna ? GO:0003729 ... A8BQZ7 36912103
    86 8brm:Se (3.33) BS01 rna ? GO:0000028 ... A0A644F5K9 36912103
    87 8brm:Sg (3.33) BS01 rna ? GO:0000028 ... A8B4F3 36912103
    88 8brm:Sh (3.33) BS01 rna ? GO:0002181 ... A0A644FA19 36912103
    89 8brm:Sj (3.33) BS01 rna ? GO:0003735 ... A0A644F843 36912103
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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