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BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8br2:A (2.9) BS01 dna ? GO:0000150 ... Q06609 37216117
    2 8br2:A (2.9) BS02 CA ? GO:0000150 ... Q06609 37216117
    3 8br2:A (2.9) BS03 ATP ? GO:0000150 ... Q06609 37216117
    4 8br2:A (2.9) BS04 CA ? GO:0000150 ... Q06609 37216117
    5 8br2:A (2.9) BS05 ATP ? GO:0000150 ... Q06609 37216117
    6 8br2:B (2.9) BS01 dna ? GO:0000150 ... Q06609 37216117
    7 8br2:B (2.9) BS02 dna ? GO:0000150 ... Q06609 37216117
    8 8br2:B (2.9) BS03 CA ? GO:0000150 ... Q06609 37216117
    9 8br2:B (2.9) BS04 ATP ? GO:0000150 ... Q06609 37216117
    10 8br2:B (2.9) BS05 CA ? GO:0000150 ... Q06609 37216117
    11 8br2:B (2.9) BS06 ATP ? GO:0000150 ... Q06609 37216117
    12 8br2:C (2.9) BS01 dna ? GO:0000150 ... Q06609 37216117
    13 8br2:C (2.9) BS02 dna ? GO:0000150 ... Q06609 37216117
    14 8br2:C (2.9) BS03 CA ? GO:0000150 ... Q06609 37216117
    15 8br2:C (2.9) BS04 ATP ? GO:0000150 ... Q06609 37216117
    16 8br2:C (2.9) BS05 CA ? GO:0000150 ... Q06609 37216117
    17 8br2:C (2.9) BS06 ATP ? GO:0000150 ... Q06609 37216117
    18 8br2:D (2.9) BS01 dna ? GO:0000150 ... Q06609 37216117
    19 8br2:D (2.9) BS02 dna ? GO:0000150 ... Q06609 37216117
    20 8br2:D (2.9) BS03 CA ? GO:0000150 ... Q06609 37216117
    21 8br2:D (2.9) BS04 ATP ? GO:0000150 ... Q06609 37216117
    22 8br2:D (2.9) BS05 CA ? GO:0000150 ... Q06609 37216117
    23 8br2:D (2.9) BS06 ATP ? GO:0000150 ... Q06609 37216117
    24 8br2:E (2.9) BS01 dna ? GO:0000150 ... Q06609 37216117
    25 8br2:E (2.9) BS02 dna ? GO:0000150 ... Q06609 37216117
    26 8br2:E (2.9) BS03 CA ? GO:0000150 ... Q06609 37216117
    27 8br2:E (2.9) BS04 ATP ? GO:0000150 ... Q06609 37216117
    28 8br2:E (2.9) BS05 CA ? GO:0000150 ... Q06609 37216117
    29 8br2:E (2.9) BS06 ATP ? GO:0000150 ... Q06609 37216117
    30 8br2:F (2.9) BS01 dna ? GO:0000150 ... Q06609 37216117
    31 8br2:F (2.9) BS02 dna ? GO:0000150 ... Q06609 37216117
    32 8br2:F (2.9) BS03 CA ? GO:0000150 ... Q06609 37216117
    33 8br2:F (2.9) BS04 ATP ? GO:0000150 ... Q06609 37216117
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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