Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8bpx:A (2.09) BS01 Q7G 7.1.1.2 GO:0005739 ... P92533 36585502
    2 8bpx:AB (2.09) BS01 peptide 3.4.24.64 GO:0000325 ... Q42290 36585502
    3 8bpx:AB (2.09) BS02 ZN 3.4.24.64 GO:0000325 ... Q42290 36585502
    4 8bpx:AC (2.09) BS01 HEM ? GO:0005739 ... P42792 36585502
    5 8bpx:AC (2.09) BS02 HEM ? GO:0005739 ... P42792 36585502
    6 8bpx:AC (2.09) BS03 UQ5 ? GO:0005739 ... P42792 36585502
    7 8bpx:AC (2.09) BS04 UQ5 ? GO:0005739 ... P42792 36585502
    8 8bpx:AD (2.09) BS01 peptide 7.1.1.8 GO:0005739 ... Q94JS0 36585502
    9 8bpx:AD (2.09) BS02 FES 7.1.1.8 GO:0005739 ... Q94JS0 36585502
    10 8bpx:AD (2.09) BS03 UQ7 7.1.1.8 GO:0005739 ... Q94JS0 36585502
    11 8bpx:AE (2.09) BS01 HEM ? GO:0005515 ... Q9FKS5 36585502
    12 8bpx:AI (2.09) BS01 peptide ? GO:0005739 ... Q9LXJ2 36585502
    13 8bpx:B (2.09) BS01 SF4 7.1.1.2 GO:0005739 ... Q42577 36585502
    14 8bpx:B (2.09) BS02 UQ9 7.1.1.2 GO:0005739 ... Q42577 36585502
    15 8bpx:BB (2.09) BS01 ZN 3.4.24.64 GO:0000325 ... Q42290 36585502
    16 8bpx:BC (2.09) BS01 HEM ? GO:0005739 ... P42792 36585502
    17 8bpx:BC (2.09) BS02 HEM ? GO:0005739 ... P42792 36585502
    18 8bpx:BC (2.09) BS03 UQ5 ? GO:0005739 ... P42792 36585502
    19 8bpx:BC (2.09) BS04 UQ7 ? GO:0005739 ... P42792 36585502
    20 8bpx:BC (2.09) BS05 Q7G ? GO:0005739 ... P42792 36585502
    21 8bpx:BC (2.09) BS06 Q7G ? GO:0005739 ... P42792 36585502
    22 8bpx:BD (2.09) BS01 peptide 7.1.1.8 GO:0005739 ... Q94JS0 36585502
    23 8bpx:BD (2.09) BS02 FES 7.1.1.8 GO:0005739 ... Q94JS0 36585502
    24 8bpx:BE (2.09) BS01 HEM ? GO:0005515 ... Q9FKS5 36585502
    25 8bpx:BI (2.09) BS01 peptide ? GO:0005739 ... Q9LXJ2 36585502
    26 8bpx:D (2.09) BS01 SF4 7.1.1.2 GO:0005739 ... P93306 36585502
    27 8bpx:E (2.09) BS01 FES 7.1.1.2 GO:0005739 ... O22769 36585502
    28 8bpx:F (2.09) BS01 FMN 7.1.1.2 GO:0005739 ... Q9FNN5 36585502
    29 8bpx:F (2.09) BS02 SF4 7.1.1.2 GO:0005739 ... Q9FNN5 36585502
    30 8bpx:G (2.09) BS01 FES 7.1.1.2 GO:0005739 ... Q9FGI6 36585502
    31 8bpx:G (2.09) BS02 SF4 7.1.1.2 GO:0005739 ... Q9FGI6 36585502
    32 8bpx:G (2.09) BS03 SF4 7.1.1.2 GO:0005739 ... Q9FGI6 36585502
    33 8bpx:H (2.09) BS01 UQ9 7.1.1.2 GO:0003954 ... P92558 36585502
    34 8bpx:H (2.09) BS02 Q7G 7.1.1.2 GO:0003954 ... P92558 36585502
    35 8bpx:H (2.09) BS03 Q7G 7.1.1.2 GO:0003954 ... P92558 36585502
    36 8bpx:I (2.09) BS01 SF4 7.1.1.2 GO:0005739 ... Q42599 36585502
    37 8bpx:I (2.09) BS02 SF4 7.1.1.2 GO:0005739 ... Q42599 36585502
    38 8bpx:J (2.09) BS01 Q7G 7.1.1.2 GO:0005739 ... P60497 36585502
    39 8bpx:L (2.09) BS01 UQ5 7.1.1.2 GO:0003954 ... P29388 36585502
    40 8bpx:M (2.09) BS01 Q7G 7.1.1.2 GO:0003954 ... P93313 36585502
    41 8bpx:N (2.09) BS01 UQ5 7.1.1.2 GO:0005739 ... O05000 36585502
    42 8bpx:N (2.09) BS02 Q7G 7.1.1.2 GO:0005739 ... O05000 36585502
    43 8bpx:O (2.09) BS01 FE ? GO:0005515 ... Q9SRR8 36585502
    44 8bpx:P (2.09) BS01 NDP ? GO:0005739 ... Q9SK66 36585502
    45 8bpx:R (2.09) BS01 ZN ? GO:0005739 ... Q9M9M6 36585502
    46 8bpx:U (2.09) BS01 8Q1 ? GO:0000036 ... O80800 36585502
    47 8bpx:W (2.09) BS01 8Q1 ? GO:0005739 ... Q9LHI0 36585502
    48 8bpx:X (2.09) BS01 Q7G ? GO:0005739 ... Q8LGE7 36585502
    49 8bpx:Z (2.09) BS01 Q7G ? GO:0005576 ... Q8RWA7 36585502
    50 8bpx:f (2.09) BS01 peptide ? GO:0005739 ... Q84W12 36585502
    51 8bpx:n (2.09) BS01 8Q1 ? GO:0000325 ... Q945M1 36585502
    52 8bpx:x (2.09) BS01 COO ? GO:0000325 ... Q9SMN1 36585502
    53 8bpx:y (2.09) BS01 peptide 4.2.1.- GO:0004089 ... Q9C6B3 36585502
    54 8bpx:y (2.09) BS02 ZN 4.2.1.- GO:0004089 ... Q9C6B3 36585502
    55 8bpx:y (2.09) BS03 COO 4.2.1.- GO:0004089 ... Q9C6B3 36585502
    56 8bpx:z (2.09) BS01 peptide 4.2.1.- GO:0004089 ... Q9FWR5 36585502
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417