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BioLiP
Download all results in tab-seperated text for 103 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8bn3:B (2.4) BS01 rna ? GO:0000055 ... P0CX43 38324474
    2 8bn3:C0 (2.4) BS01 rna ? GO:0000054 ... Q08745 38324474
    3 8bn3:C1 (2.4) BS01 rna ? GO:0000028 ... P0CX47 38324474
    4 8bn3:C3 (2.4) BS01 rna ? GO:0000462 ... P05756 38324474
    5 8bn3:C3 (2.4) BS02 rna ? GO:0000462 ... P05756 38324474
    6 8bn3:C4 (2.4) BS01 rna ? GO:0000028 ... P39516 38324474
    7 8bn3:C5 (2.4) BS01 rna ? GO:0003723 ... N/A 38324474
    8 8bn3:C6 (2.4) BS01 rna ? GO:0000462 ... P0CX51 38324474
    9 8bn3:C7 (2.4) BS01 rna ? GO:0003735 ... A0A0J9X224 38324474
    10 8bn3:C8 (2.4) BS01 rna ? GO:0000054 ... P0CX55 38324474
    11 8bn3:C9 (2.4) BS01 rna ? GO:0000028 ... P07280 38324474
    12 8bn3:D0 (2.4) BS01 rna ? GO:0003723 ... N/A 38324474
    13 8bn3:D1 (2.4) BS01 rna ? GO:0000447 ... P0C0V8 38324474
    14 8bn3:D2 (2.4) BS01 rna ? GO:0003735 ... N/A 38324474
    15 8bn3:D3 (2.4) BS01 rna ? GO:0000462 ... P0CX29 38324474
    16 8bn3:D4 (2.4) BS01 rna ? GO:0000462 ... P0CX31 38324474
    17 8bn3:D5 (2.4) BS01 rna ? N/A N/A 38324474
    18 8bn3:D6 (2.4) BS01 rna ? GO:0003735 ... N/A 38324474
    19 8bn3:D6 (2.4) BS02 ZN ? GO:0003735 ... N/A 38324474
    20 8bn3:D7 (2.4) BS01 rna ? GO:0000028 ... P35997 38324474
    21 8bn3:D8 (2.4) BS01 rna ? GO:0003735 ... N/A 38324474
    22 8bn3:D9 (2.4) BS01 rna ? GO:0003735 ... N/A 38324474
    23 8bn3:D9 (2.4) BS02 ZN ? GO:0003735 ... N/A 38324474
    24 8bn3:E0 (2.4) BS01 rna ? GO:0002181 ... P0CX33 38324474
    25 8bn3:E1 (2.4) BS01 rna ? GO:0003735 ... N/A 38324474
    26 8bn3:L2 (2.4) BS01 rna ? GO:0002181 ... P0CX45 38324474
    27 8bn3:L2 (2.4) BS02 rna ? GO:0002181 ... P0CX45 38324474
    28 8bn3:L3 (2.4) BS01 rna ? GO:0003735 ... N/A 38324474
    29 8bn3:L4 (2.4) BS01 rna ? GO:0003735 ... N/A 38324474
    30 8bn3:L4 (2.4) BS02 rna ? GO:0003735 ... N/A 38324474
    31 8bn3:L5 (2.4) BS01 rna ? GO:0003735 ... N/A 38324474
    32 8bn3:L5 (2.4) BS02 rna ? GO:0003735 ... N/A 38324474
    33 8bn3:L6 (2.4) BS01 rna N/A GO:0003735 ... N/A 38324474
    34 8bn3:L7 (2.4) BS01 rna ? GO:0000463 ... P05737 38324474
    35 8bn3:L7 (2.4) BS02 rna ? GO:0000463 ... P05737 38324474
    36 8bn3:L8 (2.4) BS01 rna ? GO:0000470 ... P17076 38324474
    37 8bn3:L8 (2.4) BS02 rna ? GO:0000470 ... P17076 38324474
    38 8bn3:L9 (2.4) BS01 rna ? GO:0003735 ... N/A 38324474
    39 8bn3:M0 (2.4) BS01 rna ? GO:0003735 ... N/A 38324474
    40 8bn3:M0 (2.4) BS02 rna ? GO:0003735 ... N/A 38324474
    41 8bn3:M1 (2.4) BS01 rna ? GO:0003735 ... N/A 38324474
    42 8bn3:M1 (2.4) BS02 rna ? GO:0003735 ... N/A 38324474
    43 8bn3:M3 (2.4) BS01 rna ? GO:0002181 ... Q12690 38324474
    44 8bn3:M3 (2.4) BS02 rna ? GO:0002181 ... Q12690 38324474
    45 8bn3:M4 (2.4) BS01 rna ? GO:0000027 ... P36105 38324474
    46 8bn3:M5 (2.4) BS01 rna ? GO:0003735 ... N/A 38324474
    47 8bn3:M5 (2.4) BS02 rna ? GO:0003735 ... N/A 38324474
    48 8bn3:M6 (2.4) BS01 rna ? GO:0000470 ... P26784 38324474
    49 8bn3:M7 (2.4) BS01 rna ? GO:0000448 ... P05740 38324474
    50 8bn3:M7 (2.4) BS02 rna ? GO:0000448 ... P05740 38324474
    51 8bn3:M8 (2.4) BS01 rna ? GO:0002181 ... P0CX49 38324474
    52 8bn3:M9 (2.4) BS01 rna ? GO:0002181 ... P0CX82 38324474
    53 8bn3:M9 (2.4) BS02 rna ? GO:0002181 ... P0CX82 38324474
    54 8bn3:N0 (2.4) BS01 rna ? GO:0002181 ... P0CX23 38324474
    55 8bn3:N0 (2.4) BS02 rna ? GO:0002181 ... P0CX23 38324474
    56 8bn3:N1 (2.4) BS01 rna ? GO:0002181 ... Q02753 38324474
    57 8bn3:N1 (2.4) BS02 rna ? GO:0002181 ... Q02753 38324474
    58 8bn3:N2 (2.4) BS01 rna ? GO:0003735 ... P05749 38324474
    59 8bn3:N3 (2.4) BS01 rna ? GO:0002181 ... P0CX41 38324474
    60 8bn3:N4 (2.4) BS01 rna ? N/A N/A 38324474
    61 8bn3:N5 (2.4) BS01 rna ? GO:0003735 ... P04456 38324474
    62 8bn3:N5 (2.4) BS02 rna ? GO:0003735 ... P04456 38324474
    63 8bn3:N6 (2.4) BS01 rna ? GO:0002181 ... P05743 38324474
    64 8bn3:N6 (2.4) BS02 rna ? GO:0002181 ... P05743 38324474
    65 8bn3:N7 (2.4) BS01 rna ? GO:0002181 ... P0C2H6 38324474
    66 8bn3:N8 (2.4) BS01 rna ? GO:0002181 ... P02406 38324474
    67 8bn3:N9 (2.4) BS01 rna ? GO:0003735 ... N/A 38324474
    68 8bn3:O0 (2.4) BS01 rna ? GO:0002181 ... P14120 38324474
    69 8bn3:O1 (2.4) BS01 rna ? GO:0002181 ... P0C2H8 38324474
    70 8bn3:O2 (2.4) BS01 rna ? GO:0003735 ... N/A 38324474
    71 8bn3:O3 (2.4) BS01 rna ? GO:0000027 ... P05744 38324474
    72 8bn3:O4 (2.4) BS01 rna ? GO:0002181 ... P87262 38324474
    73 8bn3:O4 (2.4) BS02 ZN ? GO:0002181 ... P87262 38324474
    74 8bn3:O5 (2.4) BS01 rna ? GO:0000463 ... P0CX84 38324474
    75 8bn3:O5 (2.4) BS02 rna ? GO:0000463 ... P0CX84 38324474
    76 8bn3:O6 (2.4) BS01 rna ? GO:0002181 ... P05745 38324474
    77 8bn3:O7 (2.4) BS01 rna ? GO:0000448 ... P49166 38324474
    78 8bn3:O7 (2.4) BS02 rna ? GO:0000448 ... P49166 38324474
    79 8bn3:O7 (2.4) BS03 ZN ? GO:0000448 ... P49166 38324474
    80 8bn3:O8 (2.4) BS01 rna ? GO:0003735 ... N/A 38324474
    81 8bn3:O9 (2.4) BS01 rna ? GO:0002181 ... P04650 38324474
    82 8bn3:O9 (2.4) BS02 rna ? GO:0002181 ... P04650 38324474
    83 8bn3:Q0 (2.4) BS01 rna ? GO:0003735 ... P0CH08 38324474
    84 8bn3:Q0 (2.4) BS02 ZN ? GO:0003735 ... P0CH08 38324474
    85 8bn3:Q2 (2.4) BS01 rna ? GO:0002181 ... P0CX27 38324474
    86 8bn3:Q2 (2.4) BS02 ZN ? GO:0002181 ... P0CX27 38324474
    87 8bn3:Q3 (2.4) BS01 rna ? GO:0002181 ... P0CX25 38324474
    88 8bn3:Q3 (2.4) BS02 ZN ? GO:0002181 ... P0CX25 38324474
    89 8bn3:S0 (2.4) BS01 rna ? GO:0000028 ... P32905 38324474
    90 8bn3:S1 (2.4) BS01 rna ? GO:0003735 ... N/A 38324474
    91 8bn3:S2 (2.4) BS01 rna ? GO:0003723 ... N/A 38324474
    92 8bn3:S3 (2.4) BS01 rna ? GO:0003723 ... N/A 38324474
    93 8bn3:S4 (2.4) BS01 rna ? GO:0002181 ... P0CX35 38324474
    94 8bn3:S5 (2.4) BS01 rna ? GO:0000028 ... A0A1L4AA68 38324474
    95 8bn3:S6 (2.4) BS01 rna ? GO:0000462 ... P0CX37 38324474
    96 8bn3:S7 (2.4) BS01 rna ? GO:0002181 ... P26786 38324474
    97 8bn3:S8 (2.4) BS01 rna ? GO:0000462 ... A0A0J9X221 38324474
    98 8bn3:S8 (2.4) BS02 rna ? GO:0000462 ... A0A0J9X221 38324474
    99 8bn3:S9 (2.4) BS01 rna ? GO:0000462 ... O13516 38324474
    100 8bn3:SM (2.4) BS01 rna ? N/A N/A 38324474
    101 8bn3:SM (2.4) BS02 rna ? N/A N/A 38324474
    102 8bn3:SR (2.4) BS01 rna ? GO:0001965 ... P38011 38324474
    103 8bn3:eI (2.4) BS01 rna ? GO:0003723 ... N/A 38324474
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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