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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8bim:A (2.04) BS01 rna ? GO:0000027 ... P60422 37553384
    2 8bim:B (2.04) BS01 rna ? GO:0000027 ... P60438 37553384
    3 8bim:C (2.04) BS01 rna ? GO:0001070 ... P60723 37553384
    4 8bim:D (2.04) BS01 rna ? GO:0000027 ... P62399 37553384
    5 8bim:D (2.04) BS02 rna ? GO:0000027 ... P62399 37553384
    6 8bim:D (2.04) BS03 rna ? GO:0000027 ... P62399 37553384
    7 8bim:E (2.04) BS01 rna ? GO:0000027 ... P0AG55 37553384
    8 8bim:F (2.04) BS01 rna ? GO:0002181 ... P0A7R1 37553384
    9 8bim:G (2.04) BS01 rna ? GO:0002181 ... P0AA10 37553384
    10 8bim:H (2.04) BS01 rna ? GO:0002181 ... P0ADY3 37553384
    11 8bim:I (2.04) BS01 rna ? GO:0002181 ... P02413 37553384
    12 8bim:J (2.04) BS01 rna ? GO:0000027 ... P0ADY7 37553384
    13 8bim:K (2.04) BS01 rna ? GO:0000027 ... P0AG44 37553384
    14 8bim:L (2.04) BS01 rna ? GO:0002181 ... P0C018 37553384
    15 8bim:L (2.04) BS02 rna ? GO:0002181 ... P0C018 37553384
    16 8bim:M (2.04) BS01 rna ? GO:0000027 ... P0A7K6 37553384
    17 8bim:M (2.04) BS02 rna ? GO:0000027 ... P0A7K6 37553384
    18 8bim:N (2.04) BS01 rna ? GO:0000027 ... P0A7L3 37553384
    19 8bim:O (2.04) BS01 rna ? GO:0002181 ... P0AG48 37553384
    20 8bim:P (2.04) BS01 rna ? GO:0002181 ... P61175 37553384
    21 8bim:Q (2.04) BS01 rna ? GO:0000027 ... P0ADZ0 37553384
    22 8bim:R (2.04) BS01 rna ? GO:0000027 ... P60624 37553384
    23 8bim:S (2.04) BS01 rna ? GO:0000027 ... P68919 37553384
    24 8bim:T (2.04) BS01 rna ? GO:0000027 ... P0A7L8 37553384
    25 8bim:T (2.04) BS02 rna ? GO:0000027 ... P0A7L8 37553384
    26 8bim:U (2.04) BS01 rna ? GO:0000027 ... P0A7M2 37553384
    27 8bim:V (2.04) BS01 rna ? GO:0000027 ... P0A7M6 37553384
    28 8bim:W (2.04) BS01 rna ? GO:0000027 ... P0AG51 37553384
    29 8bim:X (2.04) BS01 rna ? GO:0002181 ... P0A7M9 37553384
    30 8bim:a (2.04) BS01 rna ? GO:0000027 ... P0A7N4 37553384
    31 8bim:b (2.04) BS01 rna ? GO:0000027 ... P0A7N9 37553384
    32 8bim:c (2.04) BS01 rna ? GO:0002181 ... P0A7P5 37553384
    33 8bim:d (2.04) BS01 rna ? GO:0002181 ... P0A7Q1 37553384
    34 8bim:e (2.04) BS01 rna ? GO:0002181 ... P0A7Q6 37553384
    35 8bim:f (2.04) BS01 rna ? GO:0000028 ... P0A7V0 37553384
    36 8bim:g (2.04) BS01 rna ? GO:0000028 ... P0A7V3 37553384
    37 8bim:h (2.04) BS01 rna ? GO:0000028 ... P0A7V8 37553384
    38 8bim:i (2.04) BS01 rna ? GO:0000028 ... P0A7W1 37553384
    39 8bim:j (2.04) BS01 rna ? GO:0002181 ... P02358 37553384
    40 8bim:k (2.04) BS01 rna ? GO:0000028 ... P02359 37553384
    41 8bim:l (2.04) BS01 rna ? GO:0000028 ... P0A7W7 37553384
    42 8bim:m (2.04) BS01 rna ? GO:0000049 ... P0A7X3 37553384
    43 8bim:m (2.04) BS02 rna ? GO:0000049 ... P0A7X3 37553384
    44 8bim:n (2.04) BS01 rna ? GO:0000049 ... P0A7R5 37553384
    45 8bim:o (2.04) BS01 rna ? GO:0002181 ... P0A7R9 37553384
    46 8bim:p (2.04) BS01 rna ? GO:0000049 ... P0A7S3 37553384
    47 8bim:q (2.04) BS01 rna ? GO:0000049 ... P0A7S9 37553384
    48 8bim:r (2.04) BS01 rna ? GO:0000028 ... P0AG59 37553384
    49 8bim:s (2.04) BS01 rna ? GO:0000028 ... P0ADZ4 37553384
    50 8bim:s (2.04) BS02 rna ? GO:0000028 ... P0ADZ4 37553384
    51 8bim:t (2.04) BS01 rna ? GO:0000028 ... P0A7T3 37553384
    52 8bim:u (2.04) BS01 rna ? GO:0000028 ... P0AG63 37553384
    53 8bim:v (2.04) BS01 rna ? GO:0002181 ... P0A7T7 37553384
    54 8bim:w (2.04) BS01 rna ? GO:0000028 ... P0A7U3 37553384
    55 8bim:x (2.04) BS01 rna ? GO:0000028 ... P0A7U7 37553384
    56 8bim:y (2.04) BS01 rna ? GO:0000028 ... P68679 37553384
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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