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BioLiP
Download all results in tab-seperated text for 55 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8bh4:A (2.62) BS01 rna ? GO:0000027 ... P60422 37553384
    2 8bh4:B (2.62) BS01 rna ? GO:0000027 ... P60438 37553384
    3 8bh4:C (2.62) BS01 rna ? GO:0001070 ... P60723 37553384
    4 8bh4:D (2.62) BS01 rna ? GO:0000027 ... P62399 37553384
    5 8bh4:D (2.62) BS02 rna ? GO:0000027 ... P62399 37553384
    6 8bh4:E (2.62) BS01 rna ? GO:0000027 ... P0AG55 37553384
    7 8bh4:F (2.62) BS01 rna ? GO:0002181 ... P0A7R1 37553384
    8 8bh4:G (2.62) BS01 rna ? GO:0002181 ... P0AA10 37553384
    9 8bh4:H (2.62) BS01 rna ? GO:0002181 ... P0ADY3 37553384
    10 8bh4:H (2.62) BS02 rna ? GO:0002181 ... P0ADY3 37553384
    11 8bh4:I (2.62) BS01 rna ? GO:0002181 ... P02413 37553384
    12 8bh4:J (2.62) BS01 rna ? GO:0000027 ... P0ADY7 37553384
    13 8bh4:J (2.62) BS02 rna ? GO:0000027 ... P0ADY7 37553384
    14 8bh4:K (2.62) BS01 rna ? GO:0000027 ... P0AG44 37553384
    15 8bh4:L (2.62) BS01 rna ? GO:0002181 ... P0C018 37553384
    16 8bh4:L (2.62) BS02 rna ? GO:0002181 ... P0C018 37553384
    17 8bh4:M (2.62) BS01 rna ? GO:0000027 ... P0A7K6 37553384
    18 8bh4:M (2.62) BS02 rna ? GO:0000027 ... P0A7K6 37553384
    19 8bh4:N (2.62) BS01 rna ? GO:0000027 ... P0A7L3 37553384
    20 8bh4:O (2.62) BS01 rna ? GO:0002181 ... P0AG48 37553384
    21 8bh4:P (2.62) BS01 rna ? GO:0002181 ... P61175 37553384
    22 8bh4:Q (2.62) BS01 rna ? GO:0000027 ... P0ADZ0 37553384
    23 8bh4:R (2.62) BS01 rna ? GO:0000027 ... P60624 37553384
    24 8bh4:S (2.62) BS01 rna ? GO:0000027 ... P68919 37553384
    25 8bh4:T (2.62) BS01 rna ? GO:0000027 ... P0A7L8 37553384
    26 8bh4:U (2.62) BS01 rna ? GO:0000027 ... P0A7M2 37553384
    27 8bh4:V (2.62) BS01 rna ? GO:0000027 ... P0A7M6 37553384
    28 8bh4:W (2.62) BS01 rna ? GO:0000027 ... P0AG51 37553384
    29 8bh4:a (2.62) BS01 rna ? GO:0000027 ... P0A7N4 37553384
    30 8bh4:b (2.62) BS01 rna ? GO:0000027 ... P0A7N9 37553384
    31 8bh4:c (2.62) BS01 rna ? GO:0002181 ... P0A7P5 37553384
    32 8bh4:d (2.62) BS01 rna ? GO:0002181 ... P0A7Q1 37553384
    33 8bh4:e (2.62) BS01 rna ? GO:0002181 ... P0A7Q6 37553384
    34 8bh4:f (2.62) BS01 rna ? GO:0000028 ... P0A7V0 37553384
    35 8bh4:g (2.62) BS01 rna ? GO:0000028 ... P0A7V3 37553384
    36 8bh4:h (2.62) BS01 rna ? GO:0000028 ... P0A7V8 37553384
    37 8bh4:i (2.62) BS01 rna ? GO:0000028 ... P0A7W1 37553384
    38 8bh4:j (2.62) BS01 rna ? GO:0002181 ... P02358 37553384
    39 8bh4:k (2.62) BS01 rna ? GO:0000028 ... P02359 37553384
    40 8bh4:k (2.62) BS02 rna ? GO:0000028 ... P02359 37553384
    41 8bh4:l (2.62) BS01 rna ? GO:0000028 ... P0A7W7 37553384
    42 8bh4:m (2.62) BS01 rna ? GO:0000049 ... P0A7X3 37553384
    43 8bh4:n (2.62) BS01 rna ? GO:0000049 ... P0A7R5 37553384
    44 8bh4:o (2.62) BS01 rna ? GO:0002181 ... P0A7R9 37553384
    45 8bh4:p (2.62) BS01 rna ? GO:0000049 ... P0A7S3 37553384
    46 8bh4:q (2.62) BS01 rna ? GO:0000049 ... P0A7S9 37553384
    47 8bh4:r (2.62) BS01 rna ? GO:0000028 ... P0AG59 37553384
    48 8bh4:s (2.62) BS01 rna ? GO:0000028 ... P0ADZ4 37553384
    49 8bh4:s (2.62) BS02 rna ? GO:0000028 ... P0ADZ4 37553384
    50 8bh4:t (2.62) BS01 rna ? GO:0000028 ... P0A7T3 37553384
    51 8bh4:u (2.62) BS01 rna ? GO:0000028 ... P0AG63 37553384
    52 8bh4:v (2.62) BS01 rna ? GO:0002181 ... P0A7T7 37553384
    53 8bh4:w (2.62) BS01 rna ? GO:0000028 ... P0A7U3 37553384
    54 8bh4:x (2.62) BS01 rna ? GO:0000028 ... P0A7U7 37553384
    55 8bh4:y (2.62) BS01 rna ? GO:0000028 ... P68679 37553384
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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