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BioLiP
Download all results in tab-seperated text for 38 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8auv:A (2.38) BS01 rna ? GO:0003723 ... A0A1S4DQ51 37156858
    2 8auv:C (2.38) BS01 rna ? GO:0003735 ... A0A1S4B129 37156858
    3 8auv:D (2.38) BS01 rna ? GO:0003735 ... A0A1S3Z9G2 37156858
    4 8auv:E (2.38) BS01 rna ? GO:0000028 ... A0A1S3Y949 37156858
    5 8auv:F (2.38) BS01 rna ? GO:0003735 ... Q285L8 37156858
    6 8auv:G (2.38) BS01 rna ? GO:0000447 ... A0A1S4A3T4 37156858
    7 8auv:H (2.38) BS01 rna ? GO:0003729 ... A0A1S3ZXI6 37156858
    8 8auv:I (2.38) BS01 rna ? GO:0003735 ... A0A076L2E2 37156858
    9 8auv:J (2.38) BS01 rna ? GO:0003729 ... A0A1S4CWI7 37156858
    10 8auv:J (2.38) BS02 ZN ? GO:0003729 ... A0A1S4CWI7 37156858
    11 8auv:K (2.38) BS01 rna ? GO:0000028 ... A0A1S3XJK0 37156858
    12 8auv:L (2.38) BS01 rna ? GO:0000028 ... A0A1S4AS05 37156858
    13 8auv:M (2.38) BS01 rna ? GO:0003735 ... A0A1S3XGJ0 37156858
    14 8auv:N (2.38) BS01 rna ? GO:0003729 ... A0A1S4C0C1 37156858
    15 8auv:N (2.38) BS02 ZN ? GO:0003729 ... A0A1S4C0C1 37156858
    16 8auv:O (2.38) BS01 rna ? GO:0003735 ... A0A1S3Z906 37156858
    17 8auv:P (2.38) BS01 rna ? GO:0000462 ... A0A1S4CZK3 37156858
    18 8auv:Q (2.38) BS01 rna ? GO:0005080 ... A0A1S4ABX7 37156858
    19 8auv:R (2.38) BS01 rna ? GO:0003723 ... A0A1S3XHL0 37156858
    20 8auv:S (2.38) BS01 rna ? GO:0000028 ... A0A1S3XAN1 37156858
    21 8auv:T (2.38) BS01 rna ? GO:0003735 ... A0A1S4C879 37156858
    22 8auv:T (2.38) BS02 rna ? GO:0003735 ... A0A1S4C879 37156858
    23 8auv:U (2.38) BS01 rna ? GO:0003676 ... A0A1S3YM01 37156858
    24 8auv:U (2.38) BS02 MG ? GO:0003676 ... A0A1S3YM01 37156858
    25 8auv:V (2.38) BS01 rna ? GO:0002181 ... A0A1S4DPT4 37156858
    26 8auv:V (2.38) BS02 ZN ? GO:0002181 ... A0A1S4DPT4 37156858
    27 8auv:W (2.38) BS01 rna ? GO:0003735 ... A0A1S3ZRI7 37156858
    28 8auv:X (2.38) BS01 rna ? GO:0003735 ... A0A1S4BW10 37156858
    29 8auv:Y (2.38) BS01 rna ? GO:0000028 ... A0A1S4DFI4 37156858
    30 8auv:Z (2.38) BS01 rna ? GO:0000028 ... A0A1S3Y4M0 37156858
    31 8auv:a (2.38) BS01 rna ? GO:0003723 ... A0A1S4BXU2 37156858
    32 8auv:b (2.38) BS01 rna ? GO:0003723 ... A0A1S4B907 37156858
    33 8auv:c (2.38) BS01 rna ? GO:0003723 ... A0A1S3XAX8 37156858
    34 8auv:d (2.38) BS01 rna ? GO:0000028 ... A0A1S4BXT5 37156858
    35 8auv:e (2.38) BS01 rna ? GO:0003735 ... A0A1S4DBQ8 37156858
    36 8auv:f (2.38) BS01 rna ? GO:0000462 ... A0A1S4AU23 37156858
    37 8auv:k (2.38) BS01 rna ? GO:0003735 ... A0A1S3Z3Y7 37156858
    38 8auv:l (2.38) BS01 rna ? GO:0003723 ... A0A1S4DHU6 37156858
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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