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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 135 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8asp:a (2.9) BS01 CL0 1.97.1.12 GO:0000287 ... P29254 37542031
    2 8asp:a (2.9) BS02 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    3 8asp:a (2.9) BS03 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    4 8asp:a (2.9) BS04 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    5 8asp:a (2.9) BS05 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    6 8asp:a (2.9) BS06 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    7 8asp:a (2.9) BS07 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    8 8asp:a (2.9) BS08 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    9 8asp:a (2.9) BS09 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    10 8asp:a (2.9) BS10 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    11 8asp:a (2.9) BS11 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    12 8asp:a (2.9) BS12 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    13 8asp:a (2.9) BS13 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    14 8asp:a (2.9) BS14 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    15 8asp:a (2.9) BS15 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    16 8asp:a (2.9) BS16 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    17 8asp:a (2.9) BS17 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    18 8asp:a (2.9) BS18 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    19 8asp:a (2.9) BS19 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    20 8asp:a (2.9) BS20 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    21 8asp:a (2.9) BS21 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    22 8asp:a (2.9) BS22 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    23 8asp:a (2.9) BS23 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    24 8asp:a (2.9) BS24 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    25 8asp:a (2.9) BS25 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    26 8asp:a (2.9) BS26 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    27 8asp:a (2.9) BS27 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    28 8asp:a (2.9) BS28 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    29 8asp:a (2.9) BS29 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    30 8asp:a (2.9) BS30 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    31 8asp:a (2.9) BS31 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    32 8asp:a (2.9) BS32 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    33 8asp:a (2.9) BS33 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    34 8asp:a (2.9) BS34 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    35 8asp:a (2.9) BS35 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    36 8asp:a (2.9) BS36 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    37 8asp:a (2.9) BS37 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    38 8asp:a (2.9) BS38 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    39 8asp:a (2.9) BS39 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    40 8asp:a (2.9) BS40 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    41 8asp:a (2.9) BS41 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    42 8asp:a (2.9) BS42 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    43 8asp:a (2.9) BS43 PQN 1.97.1.12 GO:0000287 ... P29254 37542031
    44 8asp:a (2.9) BS44 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    45 8asp:a (2.9) BS45 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    46 8asp:a (2.9) BS46 45D 1.97.1.12 GO:0000287 ... P29254 37542031
    47 8asp:a (2.9) BS47 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    48 8asp:a (2.9) BS48 SF4 1.97.1.12 GO:0000287 ... P29254 37542031
    49 8asp:a (2.9) BS49 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    50 8asp:a (2.9) BS50 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    51 8asp:a (2.9) BS51 CLA 1.97.1.12 GO:0000287 ... P29254 37542031
    52 8asp:b (2.9) BS01 CL0 1.97.1.12 GO:0000287 ... P29255 37542031
    53 8asp:b (2.9) BS02 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    54 8asp:b (2.9) BS03 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    55 8asp:b (2.9) BS04 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    56 8asp:b (2.9) BS05 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    57 8asp:b (2.9) BS06 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    58 8asp:b (2.9) BS07 SF4 1.97.1.12 GO:0000287 ... P29255 37542031
    59 8asp:b (2.9) BS08 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    60 8asp:b (2.9) BS09 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    61 8asp:b (2.9) BS10 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    62 8asp:b (2.9) BS11 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    63 8asp:b (2.9) BS12 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    64 8asp:b (2.9) BS13 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    65 8asp:b (2.9) BS14 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    66 8asp:b (2.9) BS15 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    67 8asp:b (2.9) BS16 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    68 8asp:b (2.9) BS17 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    69 8asp:b (2.9) BS18 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    70 8asp:b (2.9) BS19 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    71 8asp:b (2.9) BS20 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    72 8asp:b (2.9) BS21 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    73 8asp:b (2.9) BS22 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    74 8asp:b (2.9) BS23 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    75 8asp:b (2.9) BS24 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    76 8asp:b (2.9) BS25 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    77 8asp:b (2.9) BS26 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    78 8asp:b (2.9) BS27 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    79 8asp:b (2.9) BS28 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    80 8asp:b (2.9) BS29 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    81 8asp:b (2.9) BS30 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    82 8asp:b (2.9) BS31 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    83 8asp:b (2.9) BS32 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    84 8asp:b (2.9) BS33 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    85 8asp:b (2.9) BS34 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    86 8asp:b (2.9) BS35 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    87 8asp:b (2.9) BS36 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    88 8asp:b (2.9) BS37 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    89 8asp:b (2.9) BS38 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    90 8asp:b (2.9) BS39 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    91 8asp:b (2.9) BS40 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    92 8asp:b (2.9) BS41 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    93 8asp:b (2.9) BS42 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    94 8asp:b (2.9) BS43 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    95 8asp:b (2.9) BS44 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    96 8asp:b (2.9) BS45 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    97 8asp:b (2.9) BS46 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    98 8asp:b (2.9) BS47 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    99 8asp:b (2.9) BS48 PQN 1.97.1.12 GO:0000287 ... P29255 37542031
    100 8asp:b (2.9) BS49 ECH 1.97.1.12 GO:0000287 ... P29255 37542031
    101 8asp:b (2.9) BS50 ZEX 1.97.1.12 GO:0000287 ... P29255 37542031
    102 8asp:b (2.9) BS51 CLA 1.97.1.12 GO:0000287 ... P29255 37542031
    103 8asp:c (2.9) BS01 SF4 1.97.1.12 GO:0009055 ... P32422 37542031
    104 8asp:c (2.9) BS02 SF4 1.97.1.12 GO:0009055 ... P32422 37542031
    105 8asp:f (2.9) BS01 CLA ? GO:0009522 ... P29256 37542031
    106 8asp:f (2.9) BS02 CLA ? GO:0009522 ... P29256 37542031
    107 8asp:f (2.9) BS03 ZEX ? GO:0009522 ... P29256 37542031
    108 8asp:f (2.9) BS04 CLA ? GO:0009522 ... P29256 37542031
    109 8asp:f (2.9) BS05 CLA ? GO:0009522 ... P29256 37542031
    110 8asp:f (2.9) BS06 CLA ? GO:0009522 ... P29256 37542031
    111 8asp:f (2.9) BS07 ZEX ? GO:0009522 ... P29256 37542031
    112 8asp:f (2.9) BS08 CLA ? GO:0009522 ... P29256 37542031
    113 8asp:i (2.9) BS01 CLA ? GO:0009522 ... Q55330 37542031
    114 8asp:i (2.9) BS02 CLA ? GO:0009522 ... Q55330 37542031
    115 8asp:i (2.9) BS03 CLA ? GO:0009522 ... Q55330 37542031
    116 8asp:j (2.9) BS01 CLA ? GO:0009522 ... Q55329 37542031
    117 8asp:j (2.9) BS02 CLA ? GO:0009522 ... Q55329 37542031
    118 8asp:j (2.9) BS03 ZEX ? GO:0009522 ... Q55329 37542031
    119 8asp:j (2.9) BS04 CLA ? GO:0009522 ... Q55329 37542031
    120 8asp:j (2.9) BS05 CLA ? GO:0009522 ... Q55329 37542031
    121 8asp:k (2.9) BS01 CLA ? GO:0009522 ... P72712 37542031
    122 8asp:k (2.9) BS02 CLA ? GO:0009522 ... P72712 37542031
    123 8asp:k (2.9) BS03 CLA ? GO:0009522 ... P72712 37542031
    124 8asp:k (2.9) BS04 CLA ? GO:0009522 ... P72712 37542031
    125 8asp:k (2.9) BS05 CLA ? GO:0009522 ... P72712 37542031
    126 8asp:k (2.9) BS06 CLA ? GO:0009522 ... P72712 37542031
    127 8asp:l (2.9) BS01 CLA ? GO:0005886 ... P37277 37542031
    128 8asp:l (2.9) BS02 CLA ? GO:0005886 ... P37277 37542031
    129 8asp:l (2.9) BS03 CLA ? GO:0005886 ... P37277 37542031
    130 8asp:l (2.9) BS04 EQ3 ? GO:0005886 ... P37277 37542031
    131 8asp:l (2.9) BS05 CLA ? GO:0005886 ... P37277 37542031
    132 8asp:l (2.9) BS06 CLA ? GO:0005886 ... P37277 37542031
    133 8asp:l (2.9) BS07 CLA ? GO:0005886 ... P37277 37542031
    134 8asp:m (2.9) BS01 CLA ? GO:0009522 ... P72986 37542031
    135 8asp:m (2.9) BS02 ECH ? GO:0009522 ... P72986 37542031

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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