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BioLiP
Download all results in tab-seperated text for 77 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8agv:0 (2.6) BS01 rna ? GO:0000027 ... P05317 36804914
    2 8agv:A (2.6) BS01 rna ? GO:0002181 ... P05748 36804914
    3 8agv:A (2.6) BS02 rna ? GO:0002181 ... P05748 36804914
    4 8agv:B (2.6) BS01 rna ? GO:0000470 ... P26784 36804914
    5 8agv:C (2.6) BS01 rna ? GO:0000448 ... P05740 36804914
    6 8agv:C (2.6) BS02 rna ? GO:0000448 ... P05740 36804914
    7 8agv:D (2.6) BS01 rna ? GO:0002181 ... P0CX49 36804914
    8 8agv:E (2.6) BS01 rna ? GO:0002181 ... P0CX82 36804914
    9 8agv:F (2.6) BS01 rna ? GO:0002181 ... P0CX23 36804914
    10 8agv:F (2.6) BS02 rna ? GO:0002181 ... P0CX23 36804914
    11 8agv:G (2.6) BS01 rna ? GO:0002181 ... Q02753 36804914
    12 8agv:G (2.6) BS02 rna ? GO:0002181 ... Q02753 36804914
    13 8agv:H (2.6) BS01 rna ? GO:0002181 ... P05749 36804914
    14 8agv:I (2.6) BS01 rna ? GO:0002181 ... P0CX41 36804914
    15 8agv:J (2.6) BS01 rna ? GO:0002181 ... P04449 36804914
    16 8agv:K (2.6) BS01 rna ? GO:0000027 ... P04456 36804914
    17 8agv:K (2.6) BS02 rna ? GO:0000027 ... P04456 36804914
    18 8agv:L (2.6) BS01 rna ? GO:0002181 ... P05743 36804914
    19 8agv:L (2.6) BS02 rna ? GO:0002181 ... P05743 36804914
    20 8agv:M (2.6) BS01 rna ? GO:0002181 ... P0C2H6 36804914
    21 8agv:N (2.6) BS01 rna ? GO:0002181 ... P02406 36804914
    22 8agv:O (2.6) BS01 rna ? GO:0002181 ... P05747 36804914
    23 8agv:P (2.6) BS01 rna ? GO:0002181 ... P14120 36804914
    24 8agv:Q (2.6) BS01 rna ? GO:0002181 ... P0C2H8 36804914
    25 8agv:R (2.6) BS01 rna ? GO:0002181 ... P38061 36804914
    26 8agv:R (2.6) BS02 MG ? GO:0002181 ... P38061 36804914
    27 8agv:S (2.6) BS01 rna ? GO:0000027 ... P05744 36804914
    28 8agv:T (2.6) BS01 rna ? GO:0002181 ... P87262 36804914
    29 8agv:T (2.6) BS02 ZN ? GO:0002181 ... P87262 36804914
    30 8agv:U (2.6) BS01 rna ? GO:0000463 ... P0CX84 36804914
    31 8agv:U (2.6) BS02 rna ? GO:0000463 ... P0CX84 36804914
    32 8agv:V (2.6) BS01 rna ? GO:0002181 ... P05745 36804914
    33 8agv:W (2.6) BS01 rna ? GO:0000448 ... P49166 36804914
    34 8agv:W (2.6) BS02 rna ? GO:0000448 ... P49166 36804914
    35 8agv:W (2.6) BS03 ZN ? GO:0000448 ... P49166 36804914
    36 8agv:X (2.6) BS01 rna ? GO:0002181 ... P49167 36804914
    37 8agv:Y (2.6) BS01 rna ? GO:0002181 ... P04650 36804914
    38 8agv:Y (2.6) BS02 rna ? GO:0002181 ... P04650 36804914
    39 8agv:Z (2.6) BS01 rna ? GO:0000027 ... P0CH08 36804914
    40 8agv:Z (2.6) BS02 ZN ? GO:0000027 ... P0CH08 36804914
    41 8agv:a (2.6) BS01 rna ? GO:0000049 ... Q12532 36804914
    42 8agv:a (2.6) BS02 rna ? GO:0000049 ... Q12532 36804914
    43 8agv:a (2.6) BS03 rna ? GO:0000049 ... Q12532 36804914
    44 8agv:b (2.6) BS01 rna ? GO:0002181 ... P0CX27 36804914
    45 8agv:b (2.6) BS02 ZN ? GO:0002181 ... P0CX27 36804914
    46 8agv:c (2.6) BS01 rna ? GO:0002181 ... P0CX25 36804914
    47 8agv:c (2.6) BS02 ZN ? GO:0002181 ... P0CX25 36804914
    48 8agv:e (2.6) BS01 rna 2.3.2.27 GO:0000781 ... Q04781 36804914
    49 8agv:e (2.6) BS02 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    50 8agv:e (2.6) BS03 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    51 8agv:g (2.6) BS01 rna ? GO:0000054 ... Q12522 36804914
    52 8agv:j (2.6) BS01 rna ? GO:0002181 ... P0CX45 36804914
    53 8agv:j (2.6) BS02 MG ? GO:0002181 ... P0CX45 36804914
    54 8agv:k (2.6) BS01 rna ? GO:0000027 ... P14126 36804914
    55 8agv:k (2.6) BS02 MG ? GO:0000027 ... P14126 36804914
    56 8agv:l (2.6) BS01 rna ? GO:0002181 ... P10664 36804914
    57 8agv:l (2.6) BS02 rna ? GO:0002181 ... P10664 36804914
    58 8agv:l (2.6) BS03 peptide ? GO:0002181 ... P10664 36804914
    59 8agv:m (2.6) BS01 rna ? GO:0000027 ... P26321 36804914
    60 8agv:m (2.6) BS02 rna ? GO:0000027 ... P26321 36804914
    61 8agv:n (2.6) BS01 rna ? GO:0000027 ... P05739 36804914
    62 8agv:o (2.6) BS01 rna ? GO:0000463 ... P05737 36804914
    63 8agv:o (2.6) BS02 rna ? GO:0000463 ... P05737 36804914
    64 8agv:p (2.6) BS01 rna ? GO:0000470 ... P17076 36804914
    65 8agv:p (2.6) BS02 rna ? GO:0000470 ... P17076 36804914
    66 8agv:q (2.6) BS01 rna ? GO:0002181 ... P05738 36804914
    67 8agv:r (2.6) BS01 rna ? GO:0000027 ... P41805 36804914
    68 8agv:r (2.6) BS02 rna ? GO:0000027 ... P41805 36804914
    69 8agv:s (2.6) BS01 rna ? GO:0000027 ... P0C0W9 36804914
    70 8agv:s (2.6) BS02 rna ? GO:0000027 ... P0C0W9 36804914
    71 8agv:s (2.6) BS03 rna ? GO:0000027 ... P0C0W9 36804914
    72 8agv:t (2.6) BS01 rna ? GO:0002181 ... Q12690 36804914
    73 8agv:t (2.6) BS02 rna ? GO:0002181 ... Q12690 36804914
    74 8agv:u (2.6) BS01 rna ? GO:0000027 ... P36105 36804914
    75 8agv:v (2.6) BS01 rna ? GO:0002182 ... P23301 36804914
    76 8agv:w (2.6) BS01 rna ? GO:0000055 ... P0CX43 36804914
    77 8agv:z (2.6) BS01 rna ? GO:0000027 ... P0CX54 36804914
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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