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BioLiP
Download all results in tab-seperated text for 27 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8a3y:A (3.3) BS01 dna N/A GO:0000428 ... A0A7M4DUC2 35858621
    2 8a3y:A (3.3) BS02 rna N/A GO:0000428 ... A0A7M4DUC2 35858621
    3 8a3y:A (3.3) BS03 dna N/A GO:0000428 ... A0A7M4DUC2 35858621
    4 8a3y:A (3.3) BS04 ZN N/A GO:0000428 ... A0A7M4DUC2 35858621
    5 8a3y:A (3.3) BS05 MG N/A GO:0000428 ... A0A7M4DUC2 35858621
    6 8a3y:B (3.3) BS01 dna N/A GO:0000428 ... I3LGP4 35858621
    7 8a3y:B (3.3) BS02 rna N/A GO:0000428 ... I3LGP4 35858621
    8 8a3y:B (3.3) BS03 dna N/A GO:0000428 ... I3LGP4 35858621
    9 8a3y:C (3.3) BS01 ZN N/A GO:0000428 ... I3LCH3 35858621
    10 8a3y:E (3.3) BS01 dna N/A GO:0001054 ... I3LSI7 35858621
    11 8a3y:I (3.3) BS01 ZN N/A GO:0000428 ... P60899 35858621
    12 8a3y:I (3.3) BS02 ZN N/A GO:0000428 ... P60899 35858621
    13 8a3y:J (3.3) BS01 ZN N/A GO:0000428 ... A0A4X1VYD0 35858621
    14 8a3y:L (3.3) BS01 ZN N/A GO:0046872 ... A0A8D0JYF1 35858621
    15 8a3y:Y (3.3) BS01 ZN N/A GO:0000993 ... Q4R941 35858621
    16 8a3y:a (3.3) BS01 dna N/A GO:0000786 ... P84233 35858621
    17 8a3y:a (3.3) BS02 dna N/A GO:0000786 ... P84233 35858621
    18 8a3y:b (3.3) BS01 dna N/A GO:0000786 ... P62799 35858621
    19 8a3y:b (3.3) BS02 dna N/A GO:0000786 ... P62799 35858621
    20 8a3y:c (3.3) BS01 dna N/A N/A Q6AZJ8 35858621
    21 8a3y:c (3.3) BS02 dna N/A N/A Q6AZJ8 35858621
    22 8a3y:d (3.3) BS01 dna N/A N/A A0A8J1LZU9 35858621
    23 8a3y:d (3.3) BS02 dna N/A N/A A0A8J1LZU9 35858621
    24 8a3y:e (3.3) BS01 dna N/A GO:0000786 ... P84233 35858621
    25 8a3y:e (3.3) BS02 dna N/A GO:0000786 ... P84233 35858621
    26 8a3y:f (3.3) BS01 dna N/A GO:0000786 ... P62799 35858621
    27 8a3y:f (3.3) BS02 dna N/A GO:0000786 ... P62799 35858621
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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