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BioLiP
Download all results in tab-seperated text for 134 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8a3w:A (2.89) BS01 rna ? GO:0002181 ... Q4FWX5 N/A
    2 8a3w:A (2.89) BS02 rna ? GO:0002181 ... Q4FWX5 N/A
    3 8a3w:A (2.89) BS03 rna ? GO:0002181 ... Q4FWX5 N/A
    4 8a3w:A (2.89) BS04 rna ? GO:0002181 ... Q4FWX5 N/A
    5 8a3w:B (2.89) BS01 rna ? GO:0003723 ... Q4Q2Q6 N/A
    6 8a3w:B (2.89) BS02 rna ? GO:0003723 ... Q4Q2Q6 N/A
    7 8a3w:B (2.89) BS03 rna ? GO:0003723 ... Q4Q2Q6 N/A
    8 8a3w:C (2.89) BS01 rna ? GO:0003723 ... E9ADW5 N/A
    9 8a3w:C (2.89) BS02 rna ? GO:0003723 ... E9ADW5 N/A
    10 8a3w:D (2.89) BS01 rna ? GO:0003723 ... P48157 N/A
    11 8a3w:D (2.89) BS02 rna ? GO:0003723 ... P48157 N/A
    12 8a3w:E (2.89) BS01 rna ? GO:0002181 ... Q4QC91 N/A
    13 8a3w:E (2.89) BS02 rna ? GO:0002181 ... Q4QC91 N/A
    14 8a3w:F (2.89) BS01 rna ? GO:0000027 ... Q4Q4D3 N/A
    15 8a3w:F (2.89) BS02 rna ? GO:0000027 ... Q4Q4D3 N/A
    16 8a3w:G (2.89) BS01 rna ? GO:0000470 ... Q4QIP1 N/A
    17 8a3w:G (2.89) BS02 rna ? GO:0000470 ... Q4QIP1 N/A
    18 8a3w:G (2.89) BS03 rna ? GO:0000470 ... Q4QIP1 N/A
    19 8a3w:H (2.89) BS01 rna ? GO:0003729 ... Q4QFG2 N/A
    20 8a3w:H (2.89) BS02 rna ? GO:0003729 ... Q4QFG2 N/A
    21 8a3w:H (2.89) BS03 rna ? GO:0003729 ... Q4QFG2 N/A
    22 8a3w:H (2.89) BS04 rna ? GO:0003729 ... Q4QFG2 N/A
    23 8a3w:I (2.89) BS01 rna ? GO:0003723 ... E9AEA8 N/A
    24 8a3w:I (2.89) BS02 rna ? GO:0003723 ... E9AEA8 N/A
    25 8a3w:J (2.89) BS01 rna ? GO:0003735 ... E9AFK3 N/A
    26 8a3w:J (2.89) BS02 rna ? GO:0003735 ... E9AFK3 N/A
    27 8a3w:K (2.89) BS01 rna ? GO:0003723 ... Q4QBJ1 N/A
    28 8a3w:K (2.89) BS02 rna ? GO:0003723 ... Q4QBJ1 N/A
    29 8a3w:L (2.89) BS01 rna ? GO:0003735 ... E9AFK0 N/A
    30 8a3w:L (2.89) BS02 rna ? GO:0003735 ... E9AFK0 N/A
    31 8a3w:M (2.89) BS01 rna ? GO:0002181 ... Q4Q6S3 N/A
    32 8a3w:M (2.89) BS02 rna ? GO:0002181 ... Q4Q6S3 N/A
    33 8a3w:M (2.89) BS03 rna ? GO:0002181 ... Q4Q6S3 N/A
    34 8a3w:O (2.89) BS01 rna ? GO:0000027 ... E9AF09 N/A
    35 8a3w:O (2.89) BS02 rna ? GO:0000027 ... E9AF09 N/A
    36 8a3w:O (2.89) BS03 rna ? GO:0000027 ... E9AF09 N/A
    37 8a3w:P (2.89) BS01 rna ? GO:0003723 ... Q4QG98 N/A
    38 8a3w:P (2.89) BS02 rna ? GO:0003723 ... Q4QG98 N/A
    39 8a3w:Q (2.89) BS01 rna ? GO:0003723 ... Q4QJ37 N/A
    40 8a3w:Q (2.89) BS02 rna ? GO:0003723 ... Q4QJ37 N/A
    41 8a3w:Q (2.89) BS03 rna ? GO:0003723 ... Q4QJ37 N/A
    42 8a3w:Q (2.89) BS04 rna ? GO:0003723 ... Q4QJ37 N/A
    43 8a3w:R (2.89) BS01 rna ? GO:0003735 ... Q4Q5J4 N/A
    44 8a3w:R (2.89) BS02 rna ? GO:0003735 ... Q4Q5J4 N/A
    45 8a3w:R (2.89) BS03 rna ? GO:0003735 ... Q4Q5J4 N/A
    46 8a3w:S (2.89) BS01 rna ? GO:0003735 ... Q4QEX4 N/A
    47 8a3w:S (2.89) BS02 rna ? GO:0003735 ... Q4QEX4 N/A
    48 8a3w:S (2.89) BS03 rna ? GO:0003735 ... Q4QEX4 N/A
    49 8a3w:SA (2.89) BS01 rna ? GO:0003735 ... Q4FX73 N/A
    50 8a3w:SB (2.89) BS01 rna ? GO:0000028 ... Q4Q0Q0 N/A
    51 8a3w:SC (2.89) BS01 rna ? GO:0003723 ... Q4Q4A0 N/A
    52 8a3w:SD (2.89) BS01 rna ? GO:0003723 ... Q4QIM3 N/A
    53 8a3w:SE (2.89) BS01 rna ? GO:0003723 ... Q4QG31 N/A
    54 8a3w:SF (2.89) BS01 rna ? GO:0003723 ... Q4QDL5 N/A
    55 8a3w:SG (2.89) BS01 rna ? GO:0003735 ... Q9NE83 N/A
    56 8a3w:SH (2.89) BS01 rna ? GO:0000028 ... Q868B1 N/A
    57 8a3w:SI (2.89) BS01 rna ? GO:0003735 ... E9AC32 N/A
    58 8a3w:SJ (2.89) BS01 rna ? GO:0003735 ... Q4QGW3 N/A
    59 8a3w:SK (2.89) BS01 rna ? GO:0000462 ... P25204 N/A
    60 8a3w:SK (2.89) BS02 rna ? GO:0000462 ... P25204 N/A
    61 8a3w:SL (2.89) BS01 rna ? GO:0000462 ... Q4Q9A5 N/A
    62 8a3w:SM (2.89) BS01 rna ? GO:0003735 ... Q4Q8G4 N/A
    63 8a3w:SN (2.89) BS01 rna ? GO:0003723 ... Q4Q1X7 N/A
    64 8a3w:SO (2.89) BS01 rna ? GO:0000028 ... Q4Q8H1 N/A
    65 8a3w:SP (2.89) BS01 rna ? GO:0003735 ... Q4QC89 N/A
    66 8a3w:SR (2.89) BS01 rna ? GO:0003676 ... Q4Q1Y2 N/A
    67 8a3w:SS (2.89) BS01 rna ? GO:0002181 ... Q4Q817 N/A
    68 8a3w:SS (2.89) BS02 ZN ? GO:0002181 ... Q4Q817 N/A
    69 8a3w:ST (2.89) BS01 rna ? GO:0003735 ... Q4Q3M1 N/A
    70 8a3w:SU (2.89) BS01 rna N/A GO:0003735 ... N/A N/A
    71 8a3w:SV (2.89) BS01 rna ? GO:0003735 ... Q4Q806 N/A
    72 8a3w:SW (2.89) BS01 rna ? GO:0000028 ... Q4QBV0 N/A
    73 8a3w:SX (2.89) BS01 rna ? GO:0000028 ... E9AEE8 N/A
    74 8a3w:SZ (2.89) BS01 rna ? GO:0003735 ... Q4Q1D2 N/A
    75 8a3w:Sa (2.89) BS01 rna ? GO:0003735 ... Q4Q9X4 N/A
    76 8a3w:Sb (2.89) BS01 rna ? GO:0003729 ... Q4Q8L6 N/A
    77 8a3w:Sb (2.89) BS02 ZN ? GO:0003729 ... Q4Q8L6 N/A
    78 8a3w:Sc (2.89) BS01 rna ? GO:0000028 ... Q4Q140 N/A
    79 8a3w:Sd (2.89) BS01 rna ? GO:0000028 ... Q4Q931 N/A
    80 8a3w:Se (2.89) BS01 rna ? GO:0003735 ... Q4Q7P0 N/A
    81 8a3w:Sh (2.89) BS01 rna ? GO:0003676 ... Q4Q5K7 N/A
    82 8a3w:T (2.89) BS01 rna ? GO:0002181 ... Q4QAX6 N/A
    83 8a3w:T (2.89) BS02 rna ? GO:0002181 ... Q4QAX6 N/A
    84 8a3w:T (2.89) BS03 rna ? GO:0002181 ... Q4QAX6 N/A
    85 8a3w:T (2.89) BS04 rna ? GO:0002181 ... Q4QAX6 N/A
    86 8a3w:U (2.89) BS01 rna ? GO:0002181 ... Q4Q0X2 N/A
    87 8a3w:U (2.89) BS02 rna ? GO:0002181 ... Q4Q0X2 N/A
    88 8a3w:U (2.89) BS03 rna ? GO:0002181 ... Q4Q0X2 N/A
    89 8a3w:V (2.89) BS01 rna ? GO:0000027 ... Q4QJ20 N/A
    90 8a3w:V (2.89) BS02 rna ? GO:0000027 ... Q4QJ20 N/A
    91 8a3w:V (2.89) BS03 rna ? GO:0000027 ... Q4QJ20 N/A
    92 8a3w:W (2.89) BS01 rna ? GO:0002181 ... Q4QAC5 N/A
    93 8a3w:W (2.89) BS02 rna ? GO:0002181 ... Q4QAC5 N/A
    94 8a3w:X (2.89) BS01 rna ? GO:0002181 ... Q4Q1W6 N/A
    95 8a3w:X (2.89) BS02 rna ? GO:0002181 ... Q4Q1W6 N/A
    96 8a3w:Y (2.89) BS01 rna ? GO:0003735 ... Q4Q504 N/A
    97 8a3w:Y (2.89) BS02 rna ? GO:0003735 ... Q4Q504 N/A
    98 8a3w:Z (2.89) BS01 rna ? GO:0003735 ... Q4QGW7 N/A
    99 8a3w:a (2.89) BS01 rna ? GO:0000463 ... Q4Q8V7 N/A
    100 8a3w:a (2.89) BS02 rna ? GO:0000463 ... Q4Q8V7 N/A
    101 8a3w:b (2.89) BS01 rna ? GO:0002181 ... Q4Q178 N/A
    102 8a3w:c (2.89) BS01 rna ? GO:0000463 ... Q4Q9H4 N/A
    103 8a3w:c (2.89) BS02 rna ? GO:0000463 ... Q4Q9H4 N/A
    104 8a3w:d (2.89) BS01 rna ? GO:0003723 ... E9AEK1 N/A
    105 8a3w:e (2.89) BS01 rna ? GO:0002181 ... E9AFF2 N/A
    106 8a3w:e (2.89) BS02 rna ? GO:0002181 ... E9AFF2 N/A
    107 8a3w:e (2.89) BS03 rna ? GO:0002181 ... E9AFF2 N/A
    108 8a3w:e (2.89) BS04 rna ? GO:0002181 ... E9AFF2 N/A
    109 8a3w:f (2.89) BS01 rna ? GO:0003735 ... Q4QC11 N/A
    110 8a3w:f (2.89) BS02 MG ? GO:0003735 ... Q4QC11 N/A
    111 8a3w:g (2.89) BS01 rna ? GO:0002181 ... Q4QHL3 N/A
    112 8a3w:g (2.89) BS02 rna ? GO:0002181 ... Q4QHL3 N/A
    113 8a3w:h (2.89) BS01 rna ? GO:0003735 ... Q4QDP9 N/A
    114 8a3w:h (2.89) BS02 rna ? GO:0003735 ... Q4QDP9 N/A
    115 8a3w:h (2.89) BS03 rna ? GO:0003735 ... Q4QDP9 N/A
    116 8a3w:i (2.89) BS01 rna ? GO:0002181 ... Q4QCE1 N/A
    117 8a3w:i (2.89) BS02 rna ? GO:0002181 ... Q4QCE1 N/A
    118 8a3w:j (2.89) BS01 rna ? GO:0003723 ... E9AEH2 N/A
    119 8a3w:j (2.89) BS02 rna ? GO:0003723 ... E9AEH2 N/A
    120 8a3w:j (2.89) BS03 rna ? GO:0003723 ... E9AEH2 N/A
    121 8a3w:j (2.89) BS04 ZN ? GO:0003723 ... E9AEH2 N/A
    122 8a3w:k (2.89) BS01 rna ? GO:0003735 ... Q4Q8X0 N/A
    123 8a3w:k (2.89) BS02 rna ? GO:0003735 ... Q4Q8X0 N/A
    124 8a3w:k (2.89) BS03 rna ? GO:0003735 ... Q4Q8X0 N/A
    125 8a3w:l (2.89) BS01 rna ? GO:0003735 ... Q4QEQ0 N/A
    126 8a3w:l (2.89) BS02 rna ? GO:0003735 ... Q4QEQ0 N/A
    127 8a3w:l (2.89) BS03 rna ? GO:0003735 ... Q4QEQ0 N/A
    128 8a3w:o (2.89) BS01 rna ? GO:0003735 ... Q4QC01 N/A
    129 8a3w:o (2.89) BS02 rna ? GO:0003735 ... Q4QC01 N/A
    130 8a3w:o (2.89) BS03 rna ? GO:0003735 ... Q4QC01 N/A
    131 8a3w:o (2.89) BS04 ZN ? GO:0003735 ... Q4QC01 N/A
    132 8a3w:p (2.89) BS01 rna ? GO:0003735 ... Q4Q3L3 N/A
    133 8a3w:p (2.89) BS02 rna ? GO:0003735 ... Q4Q3L3 N/A
    134 8a3w:p (2.89) BS03 rna ? GO:0003735 ... Q4Q3L3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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