Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 108 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7zux:DA (2.5) BS01 rna ? GO:0003735 ... P32905 36801861
    2 7zux:DB (2.5) BS01 rna ? GO:0000462 ... P33442 36801861
    3 7zux:DB (2.5) BS02 rna ? GO:0000462 ... P33442 36801861
    4 7zux:DC (2.5) BS01 rna ? GO:0003723 ... P25443 36801861
    5 7zux:DD (2.5) BS01 rna ? GO:0000054 ... P05750 36801861
    6 7zux:DE (2.5) BS01 rna ? GO:0002181 ... P0CX35 36801861
    7 7zux:DE (2.5) BS02 MG ? GO:0002181 ... P0CX35 36801861
    8 7zux:DF (2.5) BS01 rna ? GO:0000028 ... P26783 36801861
    9 7zux:DF (2.5) BS02 MG ? GO:0000028 ... P26783 36801861
    10 7zux:DG (2.5) BS01 rna ? GO:0000462 ... P0CX37 36801861
    11 7zux:DH (2.5) BS01 rna ? GO:0002181 ... P26786 36801861
    12 7zux:DI (2.5) BS01 rna ? GO:0000462 ... P0CX40 36801861
    13 7zux:DI (2.5) BS02 rna ? GO:0000462 ... P0CX40 36801861
    14 7zux:DJ (2.5) BS01 rna ? GO:0000462 ... O13516 36801861
    15 7zux:DK (2.5) BS01 rna ? N/A Q08745 36801861
    16 7zux:DL (2.5) BS01 rna ? GO:0000028 ... P0CX47 36801861
    17 7zux:DM (2.5) BS01 rna ? GO:0003735 ... P48589 36801861
    18 7zux:DN (2.5) BS01 rna ? GO:0000462 ... P05756 36801861
    19 7zux:DO (2.5) BS01 rna ? GO:0000028 ... P39516 36801861
    20 7zux:DP (2.5) BS01 rna ? GO:0003723 ... Q01855 36801861
    21 7zux:DQ (2.5) BS01 rna ? GO:0000462 ... P0CX51 36801861
    22 7zux:DR (2.5) BS01 rna ? GO:0000028 ... P02407 36801861
    23 7zux:DS (2.5) BS01 rna ? GO:0000054 ... P0CX55 36801861
    24 7zux:DT (2.5) BS01 rna ? GO:0000028 ... P07280 36801861
    25 7zux:DU (2.5) BS01 rna ? GO:0003723 ... P38701 36801861
    26 7zux:DV (2.5) BS01 rna ? GO:0000447 ... P0C0V8 36801861
    27 7zux:DW (2.5) BS01 rna ? GO:0002181 ... P0C0W1 36801861
    28 7zux:DX (2.5) BS01 rna ? GO:0000462 ... P0CX29 36801861
    29 7zux:DX (2.5) BS02 MG ? GO:0000462 ... P0CX29 36801861
    30 7zux:DY (2.5) BS01 rna ? GO:0000462 ... P0CX31 36801861
    31 7zux:DZ (2.5) BS01 rna ? N/A Q3E792 36801861
    32 7zux:DZ (2.5) BS02 rna ? N/A Q3E792 36801861
    33 7zux:Da (2.5) BS01 rna ? GO:0003735 ... P39939 36801861
    34 7zux:Db (2.5) BS01 rna ? GO:0000028 ... P35997 36801861
    35 7zux:Dc (2.5) BS01 rna ? GO:0000028 ... Q3E7X9 36801861
    36 7zux:Dd (2.5) BS01 rna ? GO:0002181 ... P41057 36801861
    37 7zux:Dd (2.5) BS02 ZN ? GO:0002181 ... P41057 36801861
    38 7zux:De (2.5) BS01 rna ? GO:0002181 ... P0CX33 36801861
    39 7zux:Df (2.5) BS01 rna ? GO:0003735 ... P05759 36801861
    40 7zux:Df (2.5) BS02 ZN ? GO:0003735 ... P05759 36801861
    41 7zux:Dg (2.5) BS01 rna ? GO:0001965 ... P38011 36801861
    42 7zux:EA (2.5) BS01 rna ? GO:0002181 ... P0CX45 36801861
    43 7zux:EA (2.5) BS02 rna ? GO:0002181 ... P0CX45 36801861
    44 7zux:EB (2.5) BS01 rna ? GO:0000027 ... P14126 36801861
    45 7zux:EC (2.5) BS01 rna ? GO:0002181 ... P10664 36801861
    46 7zux:EC (2.5) BS02 rna ? GO:0002181 ... P10664 36801861
    47 7zux:ED (2.5) BS01 rna ? GO:0000027 ... P26321 36801861
    48 7zux:ED (2.5) BS02 rna ? GO:0000027 ... P26321 36801861
    49 7zux:EE (2.5) BS01 rna ? GO:0000027 ... P05739 36801861
    50 7zux:EF (2.5) BS01 rna ? GO:0000463 ... P05737 36801861
    51 7zux:EF (2.5) BS02 rna ? GO:0000463 ... P05737 36801861
    52 7zux:EG (2.5) BS01 rna ? GO:0000470 ... P17076 36801861
    53 7zux:EG (2.5) BS02 rna ? GO:0000470 ... P17076 36801861
    54 7zux:EH (2.5) BS01 rna ? GO:0002181 ... P05738 36801861
    55 7zux:EI (2.5) BS01 rna ? GO:0000027 ... P41805 36801861
    56 7zux:EI (2.5) BS02 rna ? GO:0000027 ... P41805 36801861
    57 7zux:EI (2.5) BS03 rna ? GO:0000027 ... P41805 36801861
    58 7zux:EJ (2.5) BS01 rna ? GO:0000027 ... Q3E757 36801861
    59 7zux:EJ (2.5) BS02 rna ? GO:0000027 ... Q3E757 36801861
    60 7zux:EK (2.5) BS01 rna ? GO:0002181 ... Q12690 36801861
    61 7zux:EK (2.5) BS02 rna ? GO:0002181 ... Q12690 36801861
    62 7zux:EL (2.5) BS01 rna ? GO:0000027 ... P36105 36801861
    63 7zux:EM (2.5) BS01 rna ? GO:0002181 ... P05748 36801861
    64 7zux:EM (2.5) BS02 rna ? GO:0002181 ... P05748 36801861
    65 7zux:EN (2.5) BS01 rna ? GO:0000470 ... P26784 36801861
    66 7zux:EO (2.5) BS01 rna ? GO:0000448 ... P05740 36801861
    67 7zux:EO (2.5) BS02 rna ? GO:0000448 ... P05740 36801861
    68 7zux:EP (2.5) BS01 rna ? GO:0002181 ... P0CX49 36801861
    69 7zux:EQ (2.5) BS01 rna ? GO:0002181 ... P0CX82 36801861
    70 7zux:EQ (2.5) BS02 rna ? GO:0002181 ... P0CX82 36801861
    71 7zux:ER (2.5) BS01 rna ? GO:0002181 ... P0CX23 36801861
    72 7zux:ER (2.5) BS02 rna ? GO:0002181 ... P0CX23 36801861
    73 7zux:ES (2.5) BS01 rna ? GO:0002181 ... Q02753 36801861
    74 7zux:ES (2.5) BS02 rna ? GO:0002181 ... Q02753 36801861
    75 7zux:ET (2.5) BS01 rna ? GO:0003735 ... P05749 36801861
    76 7zux:EU (2.5) BS01 rna ? GO:0002181 ... P0CX41 36801861
    77 7zux:EU (2.5) BS02 rna ? GO:0002181 ... P0CX41 36801861
    78 7zux:EV (2.5) BS01 rna ? N/A P04449 36801861
    79 7zux:EV (2.5) BS02 rna ? N/A P04449 36801861
    80 7zux:EW (2.5) BS01 rna ? GO:0003735 ... P04456 36801861
    81 7zux:EW (2.5) BS02 rna ? GO:0003735 ... P04456 36801861
    82 7zux:EX (2.5) BS01 rna ? GO:0002181 ... P05743 36801861
    83 7zux:EX (2.5) BS02 rna ? GO:0002181 ... P05743 36801861
    84 7zux:EY (2.5) BS01 rna ? GO:0002181 ... P0C2H6 36801861
    85 7zux:EZ (2.5) BS01 rna ? GO:0002181 ... P02406 36801861
    86 7zux:Ea (2.5) BS01 rna ? GO:0002181 ... P05747 36801861
    87 7zux:Eb (2.5) BS01 rna ? GO:0002181 ... P14120 36801861
    88 7zux:Ec (2.5) BS01 rna ? GO:0002181 ... P0C2H8 36801861
    89 7zux:Ed (2.5) BS01 rna ? GO:0002181 ... P38061 36801861
    90 7zux:Ee (2.5) BS01 rna ? GO:0000027 ... P05744 36801861
    91 7zux:Ef (2.5) BS01 rna ? GO:0002181 ... P87262 36801861
    92 7zux:Ef (2.5) BS02 ZN ? GO:0002181 ... P87262 36801861
    93 7zux:Eg (2.5) BS01 rna ? GO:0000463 ... P0CX84 36801861
    94 7zux:Eg (2.5) BS02 rna ? GO:0000463 ... P0CX84 36801861
    95 7zux:Eh (2.5) BS01 rna ? GO:0002181 ... P05745 36801861
    96 7zux:Ei (2.5) BS01 rna ? GO:0000448 ... P49166 36801861
    97 7zux:Ei (2.5) BS02 rna ? GO:0000448 ... P49166 36801861
    98 7zux:Ei (2.5) BS03 ZN ? GO:0000448 ... P49166 36801861
    99 7zux:Ej (2.5) BS01 rna ? GO:0002181 ... P49167 36801861
    100 7zux:Ek (2.5) BS01 rna ? GO:0002181 ... P04650 36801861
    101 7zux:Ek (2.5) BS02 rna ? GO:0002181 ... P04650 36801861
    102 7zux:El (2.5) BS01 rna ? GO:0003735 ... P0CH08 36801861
    103 7zux:El (2.5) BS02 ZN ? GO:0003735 ... P0CH08 36801861
    104 7zux:En (2.5) BS01 rna ? GO:0002181 ... P0CX27 36801861
    105 7zux:En (2.5) BS02 rna ? GO:0002181 ... P0CX27 36801861
    106 7zux:En (2.5) BS03 ZN ? GO:0002181 ... P0CX27 36801861
    107 7zux:Eo (2.5) BS01 rna ? GO:0002181 ... P0CX25 36801861
    108 7zux:Eo (2.5) BS02 ZN ? GO:0002181 ... P0CX25 36801861
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417