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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7zta:L021 (2.7) BS01 rna ? GO:0000027 ... P60422 37322159
    2 7zta:L031 (2.7) BS01 rna ? GO:0000027 ... P60438 37322159
    3 7zta:L041 (2.7) BS01 rna ? GO:0001070 ... P60723 37322159
    4 7zta:L041 (2.7) BS02 MG ? GO:0001070 ... P60723 37322159
    5 7zta:L051 (2.7) BS01 rna ? GO:0000027 ... P62399 37322159
    6 7zta:L051 (2.7) BS02 rna ? GO:0000027 ... P62399 37322159
    7 7zta:L051 (2.7) BS03 rna ? GO:0000027 ... P62399 37322159
    8 7zta:L061 (2.7) BS01 rna ? GO:0000027 ... P0AG55 37322159
    9 7zta:L091 (2.7) BS01 rna ? GO:0002181 ... P0A7R1 37322159
    10 7zta:L131 (2.7) BS01 rna ? GO:0002181 ... P0AA10 37322159
    11 7zta:L141 (2.7) BS01 rna ? GO:0002181 ... P0ADY3 37322159
    12 7zta:L141 (2.7) BS02 rna ? GO:0002181 ... P0ADY3 37322159
    13 7zta:L151 (2.7) BS01 rna ? GO:0002181 ... P02413 37322159
    14 7zta:L161 (2.7) BS01 rna ? GO:0000027 ... P0ADY7 37322159
    15 7zta:L161 (2.7) BS02 rna ? GO:0000027 ... P0ADY7 37322159
    16 7zta:L161 (2.7) BS03 rna ? GO:0000027 ... P0ADY7 37322159
    17 7zta:L171 (2.7) BS01 rna ? GO:0000027 ... P0AG44 37322159
    18 7zta:L181 (2.7) BS01 rna ? GO:0002181 ... P0C018 37322159
    19 7zta:L181 (2.7) BS02 rna ? GO:0002181 ... P0C018 37322159
    20 7zta:L191 (2.7) BS01 rna ? GO:0000027 ... P0A7K6 37322159
    21 7zta:L191 (2.7) BS02 rna ? GO:0000027 ... P0A7K6 37322159
    22 7zta:L201 (2.7) BS01 rna ? GO:0000027 ... P0A7L3 37322159
    23 7zta:L211 (2.7) BS01 rna ? GO:0002181 ... P0AG48 37322159
    24 7zta:L221 (2.7) BS01 rna ? GO:0002181 ... P61175 37322159
    25 7zta:L231 (2.7) BS01 rna ? GO:0000027 ... P0ADZ0 37322159
    26 7zta:L241 (2.7) BS01 rna ? GO:0000027 ... P60624 37322159
    27 7zta:L251 (2.7) BS01 rna ? GO:0000027 ... P68919 37322159
    28 7zta:L271 (2.7) BS01 rna ? GO:0000027 ... P0A7L8 37322159
    29 7zta:L271 (2.7) BS02 rna ? GO:0000027 ... P0A7L8 37322159
    30 7zta:L281 (2.7) BS01 rna ? GO:0000027 ... P0A7M2 37322159
    31 7zta:L291 (2.7) BS01 rna ? GO:0000027 ... P0A7M6 37322159
    32 7zta:L301 (2.7) BS01 rna ? GO:0000027 ... P0AG51 37322159
    33 7zta:L311 (2.7) BS01 rna ? GO:0002181 ... P0A7M9 37322159
    34 7zta:L311 (2.7) BS02 ZN ? GO:0002181 ... P0A7M9 37322159
    35 7zta:L321 (2.7) BS01 rna ? GO:0000027 ... P0A7N4 37322159
    36 7zta:L331 (2.7) BS01 rna ? GO:0000027 ... P0A7N9 37322159
    37 7zta:L341 (2.7) BS01 rna ? GO:0002181 ... P0A7P5 37322159
    38 7zta:L351 (2.7) BS01 rna ? GO:0002181 ... P0A7Q1 37322159
    39 7zta:L361 (2.7) BS01 rna ? GO:0002181 ... P0A7Q6 37322159
    40 7zta:L361 (2.7) BS02 ZN ? GO:0002181 ... P0A7Q6 37322159
    41 7zta:S021 (2.7) BS01 rna ? GO:0000028 ... P0A7V0 37322159
    42 7zta:S021 (2.7) BS02 ZN ? GO:0000028 ... P0A7V0 37322159
    43 7zta:S031 (2.7) BS01 rna ? GO:0003676 ... P0A7V3 37322159
    44 7zta:S041 (2.7) BS01 rna ? GO:0000028 ... P0A7V8 37322159
    45 7zta:S051 (2.7) BS01 rna ? GO:0000028 ... P0A7W1 37322159
    46 7zta:S051 (2.7) BS02 rna ? GO:0000028 ... P0A7W1 37322159
    47 7zta:S061 (2.7) BS01 rna ? GO:0003735 ... P02358 37322159
    48 7zta:S071 (2.7) BS01 rna ? GO:0003723 ... P02359 37322159
    49 7zta:S071 (2.7) BS02 rna ? GO:0003723 ... P02359 37322159
    50 7zta:S081 (2.7) BS01 rna ? GO:0000028 ... P0A7W7 37322159
    51 7zta:S091 (2.7) BS01 rna ? GO:0000049 ... P0A7X3 37322159
    52 7zta:S101 (2.7) BS01 rna ? GO:0000049 ... P0A7R5 37322159
    53 7zta:S111 (2.7) BS01 rna ? GO:0002181 ... P0A7R9 37322159
    54 7zta:S121 (2.7) BS01 rna ? GO:0000049 ... P0A7S3 37322159
    55 7zta:S131 (2.7) BS01 rna ? GO:0000049 ... P0A7S9 37322159
    56 7zta:S141 (2.7) BS01 rna ? GO:0003735 ... P0AG59 37322159
    57 7zta:S151 (2.7) BS01 rna ? GO:0000028 ... P0ADZ4 37322159
    58 7zta:S151 (2.7) BS02 rna ? GO:0000028 ... P0ADZ4 37322159
    59 7zta:S161 (2.7) BS01 rna ? GO:0000028 ... P0A7T3 37322159
    60 7zta:S171 (2.7) BS01 rna ? GO:0000028 ... P0AG63 37322159
    61 7zta:S181 (2.7) BS01 rna ? GO:0003735 ... P0A7T7 37322159
    62 7zta:S191 (2.7) BS01 rna ? GO:0000028 ... P0A7U3 37322159
    63 7zta:S201 (2.7) BS01 rna ? GO:0000028 ... P0A7U7 37322159
    64 7zta:S211 (2.7) BS01 rna ? GO:0003735 ... P68679 37322159
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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