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BioLiP
Download all results in tab-seperated text for 58 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7zs5:A (3.2) BS01 rna ? GO:0000054 ... Q12522 36801861
    2 7zs5:BA (3.2) BS01 rna ? GO:0002181 ... P0CX27 36801861
    3 7zs5:BB (3.2) BS01 rna ? GO:0002181 ... P0CX25 36801861
    4 7zs5:BC (3.2) BS01 rna ? GO:0002181 ... P0CX45 36801861
    5 7zs5:BD (3.2) BS01 rna ? GO:0000027 ... P14126 36801861
    6 7zs5:BE (3.2) BS01 rna ? GO:0002181 ... P10664 36801861
    7 7zs5:BE (3.2) BS02 rna ? GO:0002181 ... P10664 36801861
    8 7zs5:BF (3.2) BS01 rna ? GO:0000027 ... P26321 36801861
    9 7zs5:BF (3.2) BS02 rna ? GO:0000027 ... P26321 36801861
    10 7zs5:BG (3.2) BS01 rna ? GO:0000027 ... Q02326 36801861
    11 7zs5:BH (3.2) BS01 rna ? GO:0000463 ... P05737 36801861
    12 7zs5:BH (3.2) BS02 rna ? GO:0000463 ... P05737 36801861
    13 7zs5:BI (3.2) BS01 rna ? GO:0000470 ... P17076 36801861
    14 7zs5:BI (3.2) BS02 rna ? GO:0000470 ... P17076 36801861
    15 7zs5:BJ (3.2) BS01 rna ? GO:0002181 ... P05738 36801861
    16 7zs5:BK (3.2) BS01 rna ? GO:0000027 ... P41805 36801861
    17 7zs5:BK (3.2) BS02 rna ? GO:0000027 ... P41805 36801861
    18 7zs5:BK (3.2) BS03 rna ? GO:0000027 ... P41805 36801861
    19 7zs5:BL (3.2) BS01 rna ? GO:0000027 ... Q3E757 36801861
    20 7zs5:BL (3.2) BS02 rna ? GO:0000027 ... Q3E757 36801861
    21 7zs5:BM (3.2) BS01 rna ? GO:0002181 ... Q12690 36801861
    22 7zs5:BM (3.2) BS02 rna ? GO:0002181 ... Q12690 36801861
    23 7zs5:BN (3.2) BS01 rna ? GO:0000027 ... P36105 36801861
    24 7zs5:BO (3.2) BS01 rna ? GO:0002181 ... P05748 36801861
    25 7zs5:BO (3.2) BS02 rna ? GO:0002181 ... P05748 36801861
    26 7zs5:BP (3.2) BS01 rna ? GO:0000470 ... P26784 36801861
    27 7zs5:BQ (3.2) BS01 rna ? GO:0000448 ... P05740 36801861
    28 7zs5:BQ (3.2) BS02 rna ? GO:0000448 ... P05740 36801861
    29 7zs5:BR (3.2) BS01 rna ? GO:0002181 ... P0CX49 36801861
    30 7zs5:BS (3.2) BS01 rna ? GO:0003723 ... P0CX82 36801861
    31 7zs5:BT (3.2) BS01 rna ? GO:0002181 ... P0CX23 36801861
    32 7zs5:BT (3.2) BS02 rna ? GO:0002181 ... P0CX23 36801861
    33 7zs5:BU (3.2) BS01 rna ? GO:0002181 ... Q02753 36801861
    34 7zs5:BU (3.2) BS02 rna ? GO:0002181 ... Q02753 36801861
    35 7zs5:BV (3.2) BS01 rna ? GO:0003735 ... P05749 36801861
    36 7zs5:BW (3.2) BS01 rna ? GO:0002181 ... P0CX41 36801861
    37 7zs5:BX (3.2) BS01 rna ? N/A P04449 36801861
    38 7zs5:BY (3.2) BS01 rna ? GO:0003735 ... P04456 36801861
    39 7zs5:BY (3.2) BS02 rna ? GO:0003735 ... P04456 36801861
    40 7zs5:BZ (3.2) BS01 rna ? GO:0002181 ... P05743 36801861
    41 7zs5:BZ (3.2) BS02 rna ? GO:0002181 ... P05743 36801861
    42 7zs5:Ba (3.2) BS01 rna ? GO:0002181 ... P0C2H6 36801861
    43 7zs5:Bb (3.2) BS01 rna ? GO:0002181 ... P02406 36801861
    44 7zs5:Bc (3.2) BS01 rna ? GO:0002181 ... P05747 36801861
    45 7zs5:Bd (3.2) BS01 rna ? GO:0002181 ... P14120 36801861
    46 7zs5:Be (3.2) BS01 rna ? GO:0002181 ... P0C2H8 36801861
    47 7zs5:Bf (3.2) BS01 rna ? GO:0002181 ... P38061 36801861
    48 7zs5:Bg (3.2) BS01 rna ? GO:0000027 ... P05744 36801861
    49 7zs5:Bh (3.2) BS01 rna ? GO:0002181 ... P87262 36801861
    50 7zs5:Bi (3.2) BS01 rna ? GO:0000463 ... P0CX84 36801861
    51 7zs5:Bi (3.2) BS02 rna ? GO:0000463 ... P0CX84 36801861
    52 7zs5:Bj (3.2) BS01 rna ? GO:0002181 ... P05745 36801861
    53 7zs5:Bk (3.2) BS01 rna ? GO:0000448 ... P49166 36801861
    54 7zs5:Bk (3.2) BS02 rna ? GO:0000448 ... P49166 36801861
    55 7zs5:Bl (3.2) BS01 rna ? GO:0002181 ... P49167 36801861
    56 7zs5:Bm (3.2) BS01 rna ? GO:0002181 ... P04650 36801861
    57 7zs5:Bm (3.2) BS02 rna ? GO:0002181 ... P04650 36801861
    58 7zs5:Bn (3.2) BS01 rna ? GO:0003735 ... P0CH08 36801861
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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