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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 300 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7zq9:1 (2.74) BS01 CLA ? GO:0009416 ... Q05093 36229605
    2 7zq9:1 (2.74) BS02 CHL ? GO:0009416 ... Q05093 36229605
    3 7zq9:1 (2.74) BS03 CLA ? GO:0009416 ... Q05093 36229605
    4 7zq9:1 (2.74) BS04 CLA ? GO:0009416 ... Q05093 36229605
    5 7zq9:1 (2.74) BS05 CLA ? GO:0009416 ... Q05093 36229605
    6 7zq9:1 (2.74) BS06 CHL ? GO:0009416 ... Q05093 36229605
    7 7zq9:1 (2.74) BS07 CHL ? GO:0009416 ... Q05093 36229605
    8 7zq9:1 (2.74) BS08 CLA ? GO:0009416 ... Q05093 36229605
    9 7zq9:1 (2.74) BS09 CLA ? GO:0009416 ... Q05093 36229605
    10 7zq9:1 (2.74) BS10 CLA ? GO:0009416 ... Q05093 36229605
    11 7zq9:1 (2.74) BS11 CLA ? GO:0009416 ... Q05093 36229605
    12 7zq9:1 (2.74) BS12 CLA ? GO:0009416 ... Q05093 36229605
    13 7zq9:1 (2.74) BS13 CLA ? GO:0009416 ... Q05093 36229605
    14 7zq9:1 (2.74) BS14 CLA ? GO:0009416 ... Q05093 36229605
    15 7zq9:1 (2.74) BS15 CLA ? GO:0009416 ... Q05093 36229605
    16 7zq9:3 (2.74) BS01 CLA N/A GO:0009765 ... N/A 36229605
    17 7zq9:3 (2.74) BS02 CLA N/A GO:0009765 ... N/A 36229605
    18 7zq9:3 (2.74) BS03 CLA N/A GO:0009765 ... N/A 36229605
    19 7zq9:3 (2.74) BS04 CLA N/A GO:0009765 ... N/A 36229605
    20 7zq9:3 (2.74) BS05 CLA N/A GO:0009765 ... N/A 36229605
    21 7zq9:3 (2.74) BS06 CLA N/A GO:0009765 ... N/A 36229605
    22 7zq9:3 (2.74) BS07 CLA N/A GO:0009765 ... N/A 36229605
    23 7zq9:3 (2.74) BS08 CLA N/A GO:0009765 ... N/A 36229605
    24 7zq9:3 (2.74) BS09 CHL N/A GO:0009765 ... N/A 36229605
    25 7zq9:3 (2.74) BS10 CLA N/A GO:0009765 ... N/A 36229605
    26 7zq9:3 (2.74) BS11 CLA N/A GO:0009765 ... N/A 36229605
    27 7zq9:3 (2.74) BS12 CLA N/A GO:0009765 ... N/A 36229605
    28 7zq9:3 (2.74) BS13 CLA N/A GO:0009765 ... N/A 36229605
    29 7zq9:3 (2.74) BS14 CLA N/A GO:0009765 ... N/A 36229605
    30 7zq9:3 (2.74) BS15 CLA N/A GO:0009765 ... N/A 36229605
    31 7zq9:3 (2.74) BS16 CLA N/A GO:0009765 ... N/A 36229605
    32 7zq9:3 (2.74) BS17 CHL N/A GO:0009765 ... N/A 36229605
    33 7zq9:4 (2.74) BS01 CHL ? GO:0009416 ... Q75VZ0 36229605
    34 7zq9:4 (2.74) BS02 CHL ? GO:0009416 ... Q75VZ0 36229605
    35 7zq9:4 (2.74) BS03 CLA ? GO:0009416 ... Q75VZ0 36229605
    36 7zq9:4 (2.74) BS04 CLA ? GO:0009416 ... Q75VZ0 36229605
    37 7zq9:4 (2.74) BS05 CLA ? GO:0009416 ... Q75VZ0 36229605
    38 7zq9:4 (2.74) BS06 CHL ? GO:0009416 ... Q75VZ0 36229605
    39 7zq9:4 (2.74) BS07 CHL ? GO:0009416 ... Q75VZ0 36229605
    40 7zq9:4 (2.74) BS08 CHL ? GO:0009416 ... Q75VZ0 36229605
    41 7zq9:4 (2.74) BS09 CLA ? GO:0009416 ... Q75VZ0 36229605
    42 7zq9:4 (2.74) BS10 CLA ? GO:0009416 ... Q75VZ0 36229605
    43 7zq9:4 (2.74) BS11 CLA ? GO:0009416 ... Q75VZ0 36229605
    44 7zq9:4 (2.74) BS12 CLA ? GO:0009416 ... Q75VZ0 36229605
    45 7zq9:4 (2.74) BS13 CLA ? GO:0009416 ... Q75VZ0 36229605
    46 7zq9:4 (2.74) BS14 CLA ? GO:0009416 ... Q75VZ0 36229605
    47 7zq9:4 (2.74) BS15 CLA ? GO:0009416 ... Q75VZ0 36229605
    48 7zq9:4 (2.74) BS16 CHL ? GO:0009416 ... Q75VZ0 36229605
    49 7zq9:5 (2.74) BS01 CLA ? GO:0009416 ... Q75VY8 36229605
    50 7zq9:5 (2.74) BS02 CLA ? GO:0009416 ... Q75VY8 36229605
    51 7zq9:5 (2.74) BS03 CLA ? GO:0009416 ... Q75VY8 36229605
    52 7zq9:5 (2.74) BS04 CLA ? GO:0009416 ... Q75VY8 36229605
    53 7zq9:5 (2.74) BS05 CLA ? GO:0009416 ... Q75VY8 36229605
    54 7zq9:5 (2.74) BS06 CHL ? GO:0009416 ... Q75VY8 36229605
    55 7zq9:5 (2.74) BS07 CHL ? GO:0009416 ... Q75VY8 36229605
    56 7zq9:5 (2.74) BS08 CHL ? GO:0009416 ... Q75VY8 36229605
    57 7zq9:5 (2.74) BS09 CLA ? GO:0009416 ... Q75VY8 36229605
    58 7zq9:5 (2.74) BS10 CLA ? GO:0009416 ... Q75VY8 36229605
    59 7zq9:5 (2.74) BS11 CLA ? GO:0009416 ... Q75VY8 36229605
    60 7zq9:5 (2.74) BS12 CLA ? GO:0009416 ... Q75VY8 36229605
    61 7zq9:5 (2.74) BS13 CLA ? GO:0009416 ... Q75VY8 36229605
    62 7zq9:5 (2.74) BS14 CLA ? GO:0009416 ... Q75VY8 36229605
    63 7zq9:5 (2.74) BS15 CLA ? GO:0009416 ... Q75VY8 36229605
    64 7zq9:5 (2.74) BS16 CLA ? GO:0009416 ... Q75VY8 36229605
    65 7zq9:5 (2.74) BS17 CHL ? GO:0009416 ... Q75VY8 36229605
    66 7zq9:5 (2.74) BS18 CLA ? GO:0009416 ... Q75VY8 36229605
    67 7zq9:5 (2.74) BS19 CHL ? GO:0009416 ... Q75VY8 36229605
    68 7zq9:5 (2.74) BS20 CLA ? GO:0009416 ... Q75VY8 36229605
    69 7zq9:6 (2.74) BS01 CLA ? GO:0009416 ... Q75VY6 36229605
    70 7zq9:6 (2.74) BS02 CHL ? GO:0009416 ... Q75VY6 36229605
    71 7zq9:6 (2.74) BS03 CLA ? GO:0009416 ... Q75VY6 36229605
    72 7zq9:6 (2.74) BS04 CHL ? GO:0009416 ... Q75VY6 36229605
    73 7zq9:6 (2.74) BS05 CLA ? GO:0009416 ... Q75VY6 36229605
    74 7zq9:6 (2.74) BS06 CLA ? GO:0009416 ... Q75VY6 36229605
    75 7zq9:6 (2.74) BS07 CLA ? GO:0009416 ... Q75VY6 36229605
    76 7zq9:6 (2.74) BS08 CHL ? GO:0009416 ... Q75VY6 36229605
    77 7zq9:6 (2.74) BS09 CHL ? GO:0009416 ... Q75VY6 36229605
    78 7zq9:6 (2.74) BS10 CHL ? GO:0009416 ... Q75VY6 36229605
    79 7zq9:6 (2.74) BS11 CLA ? GO:0009416 ... Q75VY6 36229605
    80 7zq9:6 (2.74) BS12 CLA ? GO:0009416 ... Q75VY6 36229605
    81 7zq9:6 (2.74) BS13 CLA ? GO:0009416 ... Q75VY6 36229605
    82 7zq9:6 (2.74) BS14 CLA ? GO:0009416 ... Q75VY6 36229605
    83 7zq9:6 (2.74) BS15 CLA ? GO:0009416 ... Q75VY6 36229605
    84 7zq9:6 (2.74) BS16 CLA ? GO:0009416 ... Q75VY6 36229605
    85 7zq9:6 (2.74) BS17 CHL ? GO:0009416 ... Q75VY6 36229605
    86 7zq9:6 (2.74) BS18 CLA ? GO:0009416 ... Q75VY6 36229605
    87 7zq9:6 (2.74) BS19 CHL ? GO:0009416 ... Q75VY6 36229605
    88 7zq9:6 (2.74) BS20 CLA ? GO:0009416 ... Q75VY6 36229605
    89 7zq9:7 (2.74) BS01 CHL ? GO:0009416 ... Q84Y02 36229605
    90 7zq9:7 (2.74) BS02 CLA ? GO:0009416 ... Q84Y02 36229605
    91 7zq9:7 (2.74) BS03 CLA ? GO:0009416 ... Q84Y02 36229605
    92 7zq9:7 (2.74) BS04 CLA ? GO:0009416 ... Q84Y02 36229605
    93 7zq9:7 (2.74) BS05 CHL ? GO:0009416 ... Q84Y02 36229605
    94 7zq9:7 (2.74) BS06 CLA ? GO:0009416 ... Q84Y02 36229605
    95 7zq9:7 (2.74) BS07 CLA ? GO:0009416 ... Q84Y02 36229605
    96 7zq9:7 (2.74) BS08 CLA ? GO:0009416 ... Q84Y02 36229605
    97 7zq9:7 (2.74) BS09 CLA ? GO:0009416 ... Q84Y02 36229605
    98 7zq9:7 (2.74) BS10 CLA ? GO:0009416 ... Q84Y02 36229605
    99 7zq9:7 (2.74) BS11 CLA ? GO:0009416 ... Q84Y02 36229605
    100 7zq9:7 (2.74) BS12 CLA ? GO:0009416 ... Q84Y02 36229605
    101 7zq9:7 (2.74) BS13 CLA ? GO:0009416 ... Q84Y02 36229605
    102 7zq9:7 (2.74) BS14 CHL ? GO:0009416 ... Q84Y02 36229605
    103 7zq9:7 (2.74) BS15 CLA ? GO:0009416 ... Q84Y02 36229605
    104 7zq9:8 (2.74) BS01 CHL ? GO:0009416 ... Q75VY7 36229605
    105 7zq9:8 (2.74) BS02 CLA ? GO:0009416 ... Q75VY7 36229605
    106 7zq9:8 (2.74) BS03 CHL ? GO:0009416 ... Q75VY7 36229605
    107 7zq9:8 (2.74) BS04 CLA ? GO:0009416 ... Q75VY7 36229605
    108 7zq9:8 (2.74) BS05 CLA ? GO:0009416 ... Q75VY7 36229605
    109 7zq9:8 (2.74) BS06 CLA ? GO:0009416 ... Q75VY7 36229605
    110 7zq9:8 (2.74) BS07 CHL ? GO:0009416 ... Q75VY7 36229605
    111 7zq9:8 (2.74) BS08 CHL ? GO:0009416 ... Q75VY7 36229605
    112 7zq9:8 (2.74) BS09 CLA ? GO:0009416 ... Q75VY7 36229605
    113 7zq9:8 (2.74) BS10 CLA ? GO:0009416 ... Q75VY7 36229605
    114 7zq9:8 (2.74) BS11 CLA ? GO:0009416 ... Q75VY7 36229605
    115 7zq9:8 (2.74) BS12 CLA ? GO:0009416 ... Q75VY7 36229605
    116 7zq9:8 (2.74) BS13 CLA ? GO:0009416 ... Q75VY7 36229605
    117 7zq9:8 (2.74) BS14 CLA ? GO:0009416 ... Q75VY7 36229605
    118 7zq9:8 (2.74) BS15 CLA ? GO:0009416 ... Q75VY7 36229605
    119 7zq9:8 (2.74) BS16 CLA ? GO:0009416 ... Q75VY7 36229605
    120 7zq9:9 (2.74) BS01 CLA ? GO:0009416 ... A8ITV3 36229605
    121 7zq9:9 (2.74) BS02 CLA ? GO:0009416 ... A8ITV3 36229605
    122 7zq9:9 (2.74) BS03 CLA ? GO:0009416 ... A8ITV3 36229605
    123 7zq9:9 (2.74) BS04 CLA ? GO:0009416 ... A8ITV3 36229605
    124 7zq9:9 (2.74) BS05 CHL ? GO:0009416 ... A8ITV3 36229605
    125 7zq9:9 (2.74) BS06 CHL ? GO:0009416 ... A8ITV3 36229605
    126 7zq9:9 (2.74) BS07 CLA ? GO:0009416 ... A8ITV3 36229605
    127 7zq9:9 (2.74) BS08 CLA ? GO:0009416 ... A8ITV3 36229605
    128 7zq9:9 (2.74) BS09 CLA ? GO:0009416 ... A8ITV3 36229605
    129 7zq9:9 (2.74) BS10 CLA ? GO:0009416 ... A8ITV3 36229605
    130 7zq9:9 (2.74) BS11 CLA ? GO:0009416 ... A8ITV3 36229605
    131 7zq9:9 (2.74) BS12 CLA ? GO:0009416 ... A8ITV3 36229605
    132 7zq9:92 (2.74) BS01 CLA ? GO:0009416 ... A8ITV3 36229605
    133 7zq9:92 (2.74) BS02 CLA ? GO:0009416 ... A8ITV3 36229605
    134 7zq9:92 (2.74) BS03 CLA ? GO:0009416 ... A8ITV3 36229605
    135 7zq9:92 (2.74) BS04 CLA ? GO:0009416 ... A8ITV3 36229605
    136 7zq9:92 (2.74) BS05 CLA ? GO:0009416 ... A8ITV3 36229605
    137 7zq9:92 (2.74) BS06 CHL ? GO:0009416 ... A8ITV3 36229605
    138 7zq9:92 (2.74) BS07 CHL ? GO:0009416 ... A8ITV3 36229605
    139 7zq9:92 (2.74) BS08 CLA ? GO:0009416 ... A8ITV3 36229605
    140 7zq9:92 (2.74) BS09 CLA ? GO:0009416 ... A8ITV3 36229605
    141 7zq9:92 (2.74) BS10 CLA ? GO:0009416 ... A8ITV3 36229605
    142 7zq9:92 (2.74) BS11 CLA ? GO:0009416 ... A8ITV3 36229605
    143 7zq9:92 (2.74) BS12 CLA ? GO:0009416 ... A8ITV3 36229605
    144 7zq9:92 (2.74) BS13 CLA ? GO:0009416 ... A8ITV3 36229605
    145 7zq9:A (2.74) BS01 CL0 1.97.1.12 GO:0000287 ... P12154 36229605
    146 7zq9:A (2.74) BS02 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    147 7zq9:A (2.74) BS03 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    148 7zq9:A (2.74) BS04 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    149 7zq9:A (2.74) BS05 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    150 7zq9:A (2.74) BS06 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    151 7zq9:A (2.74) BS07 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    152 7zq9:A (2.74) BS08 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    153 7zq9:A (2.74) BS09 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    154 7zq9:A (2.74) BS10 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    155 7zq9:A (2.74) BS11 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    156 7zq9:A (2.74) BS12 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    157 7zq9:A (2.74) BS13 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    158 7zq9:A (2.74) BS14 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    159 7zq9:A (2.74) BS15 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    160 7zq9:A (2.74) BS16 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    161 7zq9:A (2.74) BS17 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    162 7zq9:A (2.74) BS18 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    163 7zq9:A (2.74) BS19 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    164 7zq9:A (2.74) BS20 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    165 7zq9:A (2.74) BS21 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    166 7zq9:A (2.74) BS22 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    167 7zq9:A (2.74) BS23 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    168 7zq9:A (2.74) BS24 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    169 7zq9:A (2.74) BS25 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    170 7zq9:A (2.74) BS26 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    171 7zq9:A (2.74) BS27 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    172 7zq9:A (2.74) BS28 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    173 7zq9:A (2.74) BS29 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    174 7zq9:A (2.74) BS30 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    175 7zq9:A (2.74) BS31 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    176 7zq9:A (2.74) BS32 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    177 7zq9:A (2.74) BS33 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    178 7zq9:A (2.74) BS34 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    179 7zq9:A (2.74) BS35 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    180 7zq9:A (2.74) BS36 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    181 7zq9:A (2.74) BS37 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    182 7zq9:A (2.74) BS38 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    183 7zq9:A (2.74) BS39 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    184 7zq9:A (2.74) BS40 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    185 7zq9:A (2.74) BS41 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    186 7zq9:A (2.74) BS42 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    187 7zq9:A (2.74) BS43 PQN 1.97.1.12 GO:0000287 ... P12154 36229605
    188 7zq9:A (2.74) BS44 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    189 7zq9:A (2.74) BS45 SF4 1.97.1.12 GO:0000287 ... P12154 36229605
    190 7zq9:A (2.74) BS46 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    191 7zq9:A (2.74) BS47 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    192 7zq9:A (2.74) BS48 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    193 7zq9:A (2.74) BS49 CLA 1.97.1.12 GO:0000287 ... P12154 36229605
    194 7zq9:B (2.74) BS01 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    195 7zq9:B (2.74) BS02 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    196 7zq9:B (2.74) BS03 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    197 7zq9:B (2.74) BS04 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    198 7zq9:B (2.74) BS05 SF4 1.97.1.12 GO:0000287 ... P09144 36229605
    199 7zq9:B (2.74) BS06 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    200 7zq9:B (2.74) BS07 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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