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BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7zq5:0 (2.7) BS01 rna ? GO:0000027 ... P0A7M2 35869078
    2 7zq5:1 (2.7) BS01 rna ? GO:0000027 ... P0A7M6 35869078
    3 7zq5:2 (2.7) BS01 rna ? GO:0000027 ... P0AG51 35869078
    4 7zq5:2 (2.7) BS02 rna ? GO:0000027 ... P0AG51 35869078
    5 7zq5:3 (2.7) BS01 rna ? GO:0000027 ... P0A7N4 35869078
    6 7zq5:4 (2.7) BS01 rna ? GO:0000027 ... P0A7N9 35869078
    7 7zq5:6 (2.7) BS01 rna ? GO:0002181 ... P0A7P5 35869078
    8 7zq5:7 (2.7) BS01 rna ? GO:0002181 ... P0A7Q1 35869078
    9 7zq5:8 (2.7) BS01 rna ? GO:0002181 ... P0A7Q6 35869078
    10 7zq5:c (2.7) BS01 rna ? GO:0000027 ... P60422 35869078
    11 7zq5:d (2.7) BS01 rna ? GO:0000027 ... P60438 35869078
    12 7zq5:e (2.7) BS01 rna ? GO:0001070 ... P60723 35869078
    13 7zq5:f (2.7) BS01 rna ? GO:0000027 ... P62399 35869078
    14 7zq5:f (2.7) BS02 rna ? GO:0000027 ... P62399 35869078
    15 7zq5:g (2.7) BS01 rna ? GO:0000027 ... P0AG55 35869078
    16 7zq5:h (2.7) BS01 rna ? GO:0002181 ... P0A7R1 35869078
    17 7zq5:j (2.7) BS01 rna ? GO:0002181 ... P0AA10 35869078
    18 7zq5:k (2.7) BS01 rna ? GO:0002181 ... P0ADY3 35869078
    19 7zq5:l (2.7) BS01 rna ? GO:0002181 ... P02413 35869078
    20 7zq5:m (2.7) BS01 rna ? GO:0000027 ... P0ADY7 35869078
    21 7zq5:m (2.7) BS02 rna ? GO:0000027 ... P0ADY7 35869078
    22 7zq5:n (2.7) BS01 rna ? GO:0000027 ... P0AG44 35869078
    23 7zq5:o (2.7) BS01 rna ? GO:0002181 ... P0C018 35869078
    24 7zq5:o (2.7) BS02 rna ? GO:0002181 ... P0C018 35869078
    25 7zq5:p (2.7) BS01 rna ? GO:0000027 ... P0A7K6 35869078
    26 7zq5:q (2.7) BS01 rna ? GO:0000027 ... P0A7L3 35869078
    27 7zq5:r (2.7) BS01 rna ? GO:0002181 ... P0AG48 35869078
    28 7zq5:s (2.7) BS01 rna ? GO:0002181 ... P61175 35869078
    29 7zq5:t (2.7) BS01 rna ? GO:0000027 ... P0ADZ0 35869078
    30 7zq5:u (2.7) BS01 rna ? GO:0003723 ... P60624 35869078
    31 7zq5:w (2.7) BS01 rna ? GO:0000027 ... P68919 35869078
    32 7zq5:y (2.7) BS01 rna ? GO:0000027 ... P0A7L8 35869078
    33 7zq5:y (2.7) BS02 rna ? GO:0000027 ... P0A7L8 35869078
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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