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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7zm7:A (2.77) BS01 FES ? GO:0003954 ... G0RYA1 36427319
    2 7zm7:A (2.77) BS02 SF4 ? GO:0003954 ... G0RYA1 36427319
    3 7zm7:A (2.77) BS03 SF4 ? GO:0003954 ... G0RYA1 36427319
    4 7zm7:B (2.77) BS01 SF4 7.1.1.2 GO:0005739 ... G0SA46 36427319
    5 7zm7:B (2.77) BS02 FMN 7.1.1.2 GO:0005739 ... G0SA46 36427319
    6 7zm7:C (2.77) BS01 SF4 ? GO:0005739 ... G0SCG0 36427319
    7 7zm7:E (2.77) BS01 NDP ? N/A G0SB35 36427319
    8 7zm7:H (2.77) BS01 FES ? GO:0016491 ... G0SDM6 36427319
    9 7zm7:I (2.77) BS01 SF4 ? GO:0016020 ... G0SBG8 36427319
    10 7zm7:I (2.77) BS02 SF4 ? GO:0016020 ... G0SBG8 36427319
    11 7zm7:K (2.77) BS01 SF4 ? GO:0005739 ... G0S9I6 36427319
    12 7zm7:M (2.77) BS01 ZN ? N/A G0S6J1 36427319
    13 7zm7:O (2.77) BS01 ZMP ? GO:0000035 ... G0SBG9 36427319
    14 7zm7:P (2.77) BS01 ZMP ? GO:0005739 ... G0S4Q3 36427319
    15 7zm7:R (2.77) BS01 ZMP ? GO:0005739 ... G0SAY0 36427319
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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