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BioLiP
Download all results in tab-seperated text for 110 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7zjx:B (3.1) BS01 rna ? GO:0001514 ... Q96T21 35709277
    2 7zjx:B (3.1) BS02 rna ? GO:0001514 ... Q96T21 35709277
    3 7zjx:LD (3.1) BS01 rna ? GO:0002181 ... A0A8B8VPA8 35709277
    4 7zjx:LD (3.1) BS02 rna ? GO:0002181 ... A0A8B8VPA8 35709277
    5 7zjx:LE (3.1) BS01 rna ? GO:0003723 ... G1TL06 35709277
    6 7zjx:LF (3.1) BS01 rna ? GO:0003723 ... G1SVW5 35709277
    7 7zjx:LF (3.1) BS02 rna ? GO:0003723 ... G1SVW5 35709277
    8 7zjx:LG (3.1) BS01 rna ? GO:0000027 ... P19949 35709277
    9 7zjx:LG (3.1) BS02 rna ? GO:0000027 ... P19949 35709277
    10 7zjx:LH (3.1) BS01 rna ? GO:0000027 ... G1SKF7 35709277
    11 7zjx:LI (3.1) BS01 rna ? GO:0000463 ... A0A7J8C453 35709277
    12 7zjx:LI (3.1) BS02 rna ? GO:0000463 ... A0A7J8C453 35709277
    13 7zjx:LJ (3.1) BS01 rna ? GO:0000470 ... P62424 35709277
    14 7zjx:LJ (3.1) BS02 rna ? GO:0000470 ... P62424 35709277
    15 7zjx:LK (3.1) BS01 rna ? GO:0002181 ... G1SWI6 35709277
    16 7zjx:LL (3.1) BS01 rna ? GO:0000027 ... B7NZQ2 35709277
    17 7zjx:LL (3.1) BS02 rna ? GO:0000027 ... B7NZQ2 35709277
    18 7zjx:LM (3.1) BS01 rna ? GO:0003723 ... G1TUB8 35709277
    19 7zjx:LM (3.1) BS02 rna ? GO:0003723 ... G1TUB8 35709277
    20 7zjx:LO (3.1) BS01 rna ? GO:0003723 ... G1TKB3 35709277
    21 7zjx:LO (3.1) BS02 rna ? GO:0003723 ... G1TKB3 35709277
    22 7zjx:LP (3.1) BS01 rna ? GO:0003723 ... G1SZ12 35709277
    23 7zjx:LQ (3.1) BS01 rna ? GO:0002181 ... G1T0C1 35709277
    24 7zjx:LQ (3.1) BS02 rna ? GO:0002181 ... G1T0C1 35709277
    25 7zjx:LR (3.1) BS01 rna ? GO:0003729 ... A0A0N8ETI8 35709277
    26 7zjx:LS (3.1) BS01 rna ? GO:0002181 ... A0A8J4KQ25 35709277
    27 7zjx:LS (3.1) BS02 rna ? GO:0002181 ... A0A8J4KQ25 35709277
    28 7zjx:LT (3.1) BS01 rna ? GO:0002181 ... F6QKI9 35709277
    29 7zjx:LU (3.1) BS01 rna ? GO:0003723 ... A0A2J8KH59 35709277
    30 7zjx:LU (3.1) BS02 rna ? GO:0003723 ... A0A2J8KH59 35709277
    31 7zjx:LV (3.1) BS01 rna ? GO:0003735 ... A0A1Z5LHJ5 35709277
    32 7zjx:LV (3.1) BS02 rna ? GO:0003735 ... A0A1Z5LHJ5 35709277
    33 7zjx:LW (3.1) BS01 rna ? GO:0003735 ... G1SHQ2 35709277
    34 7zjx:LW (3.1) BS02 rna ? GO:0003735 ... G1SHQ2 35709277
    35 7zjx:LX (3.1) BS01 rna ? GO:0002181 ... Q4R5I3 35709277
    36 7zjx:LY (3.1) BS01 rna ? GO:0003735 ... A0A3P9HH38 35709277
    37 7zjx:LZ (3.1) BS01 rna ? GO:0000027 ... G1SE28 35709277
    38 7zjx:LZ (3.1) BS02 rna ? GO:0000027 ... G1SE28 35709277
    39 7zjx:La (3.1) BS01 rna ? GO:0000027 ... G1SE76 35709277
    40 7zjx:La (3.1) BS02 rna ? GO:0000027 ... G1SE76 35709277
    41 7zjx:Lb (3.1) BS01 rna ? GO:0002181 ... A0A5N3X333 35709277
    42 7zjx:Lb (3.1) BS02 rna ? GO:0002181 ... A0A5N3X333 35709277
    43 7zjx:Lc (3.1) BS01 rna ? GO:0003735 ... A0A851LWS6 35709277
    44 7zjx:Ld (3.1) BS01 rna ? GO:0003735 ... G1SNY0 35709277
    45 7zjx:Le (3.1) BS01 rna ? GO:0002181 ... G1SGR6 35709277
    46 7zjx:Lf (3.1) BS01 rna ? GO:0002181 ... G1TDL2 35709277
    47 7zjx:Lg (3.1) BS01 rna ? GO:0002181 ... G1SHG0 35709277
    48 7zjx:Lh (3.1) BS01 rna ? GO:0003735 ... G1TUN8 35709277
    49 7zjx:Li (3.1) BS01 rna ? GO:0000049 ... G1SF08 35709277
    50 7zjx:Lj (3.1) BS01 rna ? GO:0003735 ... G1TXG5 35709277
    51 7zjx:Lj (3.1) BS02 ZN ? GO:0003735 ... G1TXG5 35709277
    52 7zjx:Lk (3.1) BS01 rna ? GO:0000463 ... G1SIT5 35709277
    53 7zjx:Lk (3.1) BS02 rna ? GO:0000463 ... G1SIT5 35709277
    54 7zjx:Ll (3.1) BS01 rna ? GO:0002181 ... A0A1S3FQR5 35709277
    55 7zjx:Lm (3.1) BS01 rna ? GO:0003723 ... U3KPD5 35709277
    56 7zjx:Lm (3.1) BS02 rna ? GO:0003723 ... U3KPD5 35709277
    57 7zjx:Lm (3.1) BS03 ZN ? GO:0003723 ... U3KPD5 35709277
    58 7zjx:Ln (3.1) BS01 rna ? GO:0003735 ... A0A1A7W9T9 35709277
    59 7zjx:Lo (3.1) BS01 rna ? GO:0003735 ... G1TTN1 35709277
    60 7zjx:Lo (3.1) BS02 rna ? GO:0003735 ... G1TTN1 35709277
    61 7zjx:Lp (3.1) BS01 rna ? GO:0003723 ... A0A8C8Y9V5 35709277
    62 7zjx:Lp (3.1) BS02 ZN ? GO:0003723 ... A0A8C8Y9V5 35709277
    63 7zjx:Lq (3.1) BS01 rna ? GO:0003735 ... A0A7J7V6K8 35709277
    64 7zjx:Lq (3.1) BS02 ZN ? GO:0003735 ... A0A7J7V6K8 35709277
    65 7zjx:Lr (3.1) BS01 rna ? GO:0003735 ... A0A6I9ZMF9 35709277
    66 7zjx:Lr (3.1) BS02 ZN ? GO:0003735 ... A0A6I9ZMF9 35709277
    67 7zjx:Ls (3.1) BS01 rna ? GO:0003735 ... A0A4U1EJN3 35709277
    68 7zjx:Lx (3.1) BS01 rna ? GO:0000470 ... G1SKZ8 35709277
    69 7zjx:SB (3.1) BS01 rna ? GO:0000028 ... A0A7J8BG50 35709277
    70 7zjx:SC (3.1) BS01 rna ? GO:0000028 ... A0A3M0JHZ8 35709277
    71 7zjx:SD (3.1) BS01 rna ? GO:0003735 ... A0A8C0T835 35709277
    72 7zjx:SD (3.1) BS02 rna ? GO:0003735 ... A0A8C0T835 35709277
    73 7zjx:SD (3.1) BS03 ZN ? GO:0003735 ... A0A8C0T835 35709277
    74 7zjx:SE (3.1) BS01 rna ? GO:0003735 ... G1T8A2 35709277
    75 7zjx:SF (3.1) BS01 rna ? GO:0002181 ... A0A2K5LQY6 35709277
    76 7zjx:SF (3.1) BS02 ZN ? GO:0002181 ... A0A2K5LQY6 35709277
    77 7zjx:SG (3.1) BS01 rna ? GO:0001934 ... A0A2K6K8B0 35709277
    78 7zjx:SH (3.1) BS01 rna ? GO:0003735 ... G1U7M4 35709277
    79 7zjx:SH (3.1) BS02 ZN ? GO:0003735 ... G1U7M4 35709277
    80 7zjx:SL (3.1) BS01 rna ? GO:0000028 ... G1TLT8 35709277
    81 7zjx:SM (3.1) BS01 rna ? GO:0003735 ... G1SS70 35709277
    82 7zjx:SM (3.1) BS02 rna ? GO:0003735 ... G1SS70 35709277
    83 7zjx:SN (3.1) BS01 rna ? GO:0003723 ... O18789 35709277
    84 7zjx:SO (3.1) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 35709277
    85 7zjx:SP (3.1) BS01 rna ? GO:0003723 ... Q76N24 35709277
    86 7zjx:SQ (3.1) BS01 rna ? GO:0000028 ... A0A5F9DBR8 35709277
    87 7zjx:SQ (3.1) BS02 rna ? GO:0000028 ... A0A5F9DBR8 35709277
    88 7zjx:SR (3.1) BS01 rna ? GO:0000082 ... P62753 35709277
    89 7zjx:SS (3.1) BS01 rna ? GO:0003735 ... G1SVB0 35709277
    90 7zjx:ST (3.1) BS01 rna ? GO:0000462 ... Q5E958 35709277
    91 7zjx:ST (3.1) BS02 rna ? GO:0000462 ... Q5E958 35709277
    92 7zjx:SU (3.1) BS01 rna ? GO:0003723 ... B7NZS8 35709277
    93 7zjx:SV (3.1) BS01 rna ? GO:0003723 ... G1TPV3 35709277
    94 7zjx:SW (3.1) BS01 rna ? GO:0003735 ... G1TRM4 35709277
    95 7zjx:SX (3.1) BS01 rna ? GO:0003735 ... G1SFR8 35709277
    96 7zjx:SY (3.1) BS01 rna ? GO:0003735 ... A0A663F1C0 35709277
    97 7zjx:SY (3.1) BS02 rna ? GO:0003735 ... A0A663F1C0 35709277
    98 7zjx:SZ (3.1) BS01 rna ? GO:0000028 ... A0A7L0BEC6 35709277
    99 7zjx:SZ (3.1) BS02 rna ? GO:0000028 ... A0A7L0BEC6 35709277
    100 7zjx:Sa (3.1) BS01 rna ? GO:0000028 ... G1U0Q2 35709277
    101 7zjx:Sb (3.1) BS01 rna ? GO:0000462 ... G1SGX4 35709277
    102 7zjx:Sc (3.1) BS01 rna ? GO:0003735 ... G1TU13 35709277
    103 7zjx:Sd (3.1) BS01 rna ? GO:0003676 ... H0WTR0 35709277
    104 7zjx:Se (3.1) BS01 rna ? GO:0000028 ... A0A2Y9E7Q1 35709277
    105 7zjx:Sf (3.1) BS01 rna ? GO:0003723 ... G1SIZ2 35709277
    106 7zjx:Sh (3.1) BS01 rna ? GO:0003735 ... G1TG89 35709277
    107 7zjx:Si (3.1) BS01 rna ? GO:0003735 ... G1SZ47 35709277
    108 7zjx:Sj (3.1) BS01 rna ? GO:0003735 ... A0A6J1UT65 35709277
    109 7zjx:Sk (3.1) BS01 rna ? GO:0003735 ... A0A2U4BVW1 35709277
    110 7zjx:Sk (3.1) BS02 rna ? GO:0003735 ... A0A2U4BVW1 35709277
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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