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BioLiP
Download all results in tab-seperated text for 46 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7z13:2 (3.4) BS01 dna 3.6.4.12 GO:0003677 ... N/A 35705812
    2 7z13:2 (3.4) BS02 ATP 3.6.4.12 GO:0003677 ... N/A 35705812
    3 7z13:2 (3.4) BS03 ZN 3.6.4.12 GO:0003677 ... N/A 35705812
    4 7z13:2 (3.4) BS04 ATP 3.6.4.12 GO:0003677 ... N/A 35705812
    5 7z13:3 (3.4) BS01 dna 3.6.4.12 GO:0000727 ... P24279 35705812
    6 7z13:3 (3.4) BS02 ATP 3.6.4.12 GO:0000727 ... P24279 35705812
    7 7z13:3 (3.4) BS03 ATP 3.6.4.12 GO:0000727 ... P24279 35705812
    8 7z13:4 (3.4) BS01 dna 3.6.4.12 GO:0000727 ... P30665 35705812
    9 7z13:4 (3.4) BS02 ADP 3.6.4.12 GO:0000727 ... P30665 35705812
    10 7z13:4 (3.4) BS03 ZN 3.6.4.12 GO:0000727 ... P30665 35705812
    11 7z13:4 (3.4) BS04 ADP 3.6.4.12 GO:0000727 ... P30665 35705812
    12 7z13:5 (3.4) BS01 dna 3.6.4.12 GO:0003677 ... N/A 35705812
    13 7z13:5 (3.4) BS02 ATP 3.6.4.12 GO:0003677 ... N/A 35705812
    14 7z13:5 (3.4) BS03 ATP 3.6.4.12 GO:0003677 ... N/A 35705812
    15 7z13:5 (3.4) BS04 ZN 3.6.4.12 GO:0003677 ... N/A 35705812
    16 7z13:6 (3.4) BS01 dna 3.6.4.12 GO:0000727 ... P53091 35705812
    17 7z13:6 (3.4) BS02 ATP 3.6.4.12 GO:0000727 ... P53091 35705812
    18 7z13:6 (3.4) BS03 ADP 3.6.4.12 GO:0000727 ... P53091 35705812
    19 7z13:6 (3.4) BS04 ZN 3.6.4.12 GO:0000727 ... P53091 35705812
    20 7z13:7 (3.4) BS01 ATP N/A GO:0003677 ... N/A 35705812
    21 7z13:7 (3.4) BS02 ZN N/A GO:0003677 ... N/A 35705812
    22 7z13:N (3.4) BS01 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 35705812
    23 7z13:N (3.4) BS02 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 35705812
    24 7z13:Q (3.4) BS01 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 35705812
    25 7z13:Q (3.4) BS02 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 35705812
    26 7z13:a (3.4) BS01 dna 3.6.4.12 GO:0003677 ... N/A 35705812
    27 7z13:a (3.4) BS02 ATP 3.6.4.12 GO:0003677 ... N/A 35705812
    28 7z13:a (3.4) BS03 ZN 3.6.4.12 GO:0003677 ... N/A 35705812
    29 7z13:a (3.4) BS04 ATP 3.6.4.12 GO:0003677 ... N/A 35705812
    30 7z13:b (3.4) BS01 dna 3.6.4.12 GO:0000727 ... P24279 35705812
    31 7z13:b (3.4) BS02 ATP 3.6.4.12 GO:0000727 ... P24279 35705812
    32 7z13:b (3.4) BS03 ATP 3.6.4.12 GO:0000727 ... P24279 35705812
    33 7z13:c (3.4) BS01 dna 3.6.4.12 GO:0000727 ... P30665 35705812
    34 7z13:c (3.4) BS02 ADP 3.6.4.12 GO:0000727 ... P30665 35705812
    35 7z13:c (3.4) BS03 ZN 3.6.4.12 GO:0000727 ... P30665 35705812
    36 7z13:c (3.4) BS04 ADP 3.6.4.12 GO:0000727 ... P30665 35705812
    37 7z13:d (3.4) BS01 dna 3.6.4.12 GO:0003677 ... N/A 35705812
    38 7z13:d (3.4) BS02 ATP 3.6.4.12 GO:0003677 ... N/A 35705812
    39 7z13:d (3.4) BS03 ATP 3.6.4.12 GO:0003677 ... N/A 35705812
    40 7z13:d (3.4) BS04 ZN 3.6.4.12 GO:0003677 ... N/A 35705812
    41 7z13:e (3.4) BS01 dna 3.6.4.12 GO:0000727 ... P53091 35705812
    42 7z13:e (3.4) BS02 ATP 3.6.4.12 GO:0000727 ... P53091 35705812
    43 7z13:e (3.4) BS03 ADP 3.6.4.12 GO:0000727 ... P53091 35705812
    44 7z13:e (3.4) BS04 ZN 3.6.4.12 GO:0000727 ... P53091 35705812
    45 7z13:f (3.4) BS01 ATP N/A GO:0003677 ... N/A 35705812
    46 7z13:f (3.4) BS02 ZN N/A GO:0003677 ... N/A 35705812
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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