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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7x8x:A (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 N/A
    2 7x8x:B (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    3 7x8x:B (3.24) BS02 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    4 7x8x:B (3.24) BS03 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    5 7x8x:C (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 N/A
    6 7x8x:D (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    7 7x8x:D (3.24) BS02 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    8 7x8x:D (3.24) BS03 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    9 7x8x:E (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 N/A
    10 7x8x:F (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 N/A
    11 7x8x:G (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    12 7x8x:G (3.24) BS02 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    13 7x8x:G (3.24) BS03 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    14 7x8x:H (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 N/A
    15 7x8x:I (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    16 7x8x:I (3.24) BS02 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    17 7x8x:I (3.24) BS03 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    18 7x8x:J (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 N/A
    19 7x8x:K (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    20 7x8x:K (3.24) BS02 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    21 7x8x:K (3.24) BS03 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    22 7x8x:L (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 N/A
    23 7x8x:M (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    24 7x8x:M (3.24) BS02 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    25 7x8x:M (3.24) BS03 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    26 7x8x:N (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    27 7x8x:N (3.24) BS02 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    28 7x8x:N (3.24) BS03 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    29 7x8x:O (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 N/A
    30 7x8x:P (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    31 7x8x:P (3.24) BS02 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    32 7x8x:P (3.24) BS03 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    33 7x8x:Q (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 N/A
    34 7x8x:R (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    35 7x8x:R (3.24) BS02 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    36 7x8x:R (3.24) BS03 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    37 7x8x:S (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 N/A
    38 7x8x:T (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 N/A
    39 7x8x:U (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    40 7x8x:U (3.24) BS02 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    41 7x8x:U (3.24) BS03 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    42 7x8x:V (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 N/A
    43 7x8x:W (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    44 7x8x:W (3.24) BS02 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    45 7x8x:W (3.24) BS03 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    46 7x8x:X (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 N/A
    47 7x8x:Y (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    48 7x8x:Y (3.24) BS02 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    49 7x8x:Y (3.24) BS03 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    50 7x8x:Z (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    51 7x8x:Z (3.24) BS02 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    52 7x8x:Z (3.24) BS03 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    53 7x8x:a (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 N/A
    54 7x8x:b (3.24) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    55 7x8x:b (3.24) BS02 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    56 7x8x:b (3.24) BS03 AI4 3.4.21.92 GO:0004176 ... P9WPC5 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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