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BioLiP
Download all results in tab-seperated text for 54 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7w5a:1 (3.6) BS01 rna ? GO:0000375 ... O95391 35705093
    2 7w5a:1 (3.6) BS02 ZN ? GO:0000375 ... O95391 35705093
    3 7w5a:2 (3.6) BS01 rna ? GO:0003014 ... Q9H875 35705093
    4 7w5a:2 (3.6) BS02 rna ? GO:0003014 ... Q9H875 35705093
    5 7w5a:A (3.6) BS01 rna ? GO:0000244 ... Q6P2Q9 35705093
    6 7w5a:A (3.6) BS02 rna ? GO:0000244 ... Q6P2Q9 35705093
    7 7w5a:A (3.6) BS03 rna ? GO:0000244 ... Q6P2Q9 35705093
    8 7w5a:A (3.6) BS04 rna ? GO:0000244 ... Q6P2Q9 35705093
    9 7w5a:A (3.6) BS05 rna ? GO:0000244 ... Q6P2Q9 35705093
    10 7w5a:A (3.6) BS06 IHP ? GO:0000244 ... Q6P2Q9 35705093
    11 7w5a:C (3.6) BS01 rna ? GO:0000398 ... Q15029 35705093
    12 7w5a:C (3.6) BS02 GTP ? GO:0000398 ... Q15029 35705093
    13 7w5a:J (3.6) BS01 rna ? GO:0000245 ... Q9BZJ0 35705093
    14 7w5a:L (3.6) BS01 rna ? GO:0000077 ... Q99459 35705093
    15 7w5a:L (3.6) BS02 rna ? GO:0000077 ... Q99459 35705093
    16 7w5a:M (3.6) BS01 rna ? GO:0000398 ... O95926 35705093
    17 7w5a:M (3.6) BS02 rna ? GO:0000398 ... O95926 35705093
    18 7w5a:N (3.6) BS01 rna ? GO:0000398 ... P41223 35705093
    19 7w5a:N (3.6) BS02 ZN ? GO:0000398 ... P41223 35705093
    20 7w5a:N (3.6) BS03 ZN ? GO:0000398 ... P41223 35705093
    21 7w5a:N (3.6) BS04 ZN ? GO:0000398 ... P41223 35705093
    22 7w5a:O (3.6) BS01 rna ? GO:0000398 ... Q9NW64 35705093
    23 7w5a:O (3.6) BS02 rna ? GO:0000398 ... Q9NW64 35705093
    24 7w5a:O (3.6) BS03 ZN ? GO:0000398 ... Q9NW64 35705093
    25 7w5a:O (3.6) BS04 ZN ? GO:0000398 ... Q9NW64 35705093
    26 7w5a:O (3.6) BS05 ZN ? GO:0000398 ... Q9NW64 35705093
    27 7w5a:P (3.6) BS01 rna ? GO:0000398 ... Q9P013 35705093
    28 7w5a:P (3.6) BS02 rna ? GO:0000398 ... Q9P013 35705093
    29 7w5a:P (3.6) BS03 rna ? GO:0000398 ... Q9P013 35705093
    30 7w5a:Q (3.6) BS01 ATP 3.6.4.13 GO:0000398 ... O60306 35705093
    31 7w5a:R (3.6) BS01 rna ? GO:0000122 ... Q13573 35705093
    32 7w5a:R (3.6) BS02 rna ? GO:0000122 ... Q13573 35705093
    33 7w5a:U (3.6) BS01 rna ? GO:0000398 ... Q9UQ35 35705093
    34 7w5a:W (3.6) BS01 rna ? GO:0000398 ... O60508 35705093
    35 7w5a:W (3.6) BS02 rna ? GO:0000398 ... O60508 35705093
    36 7w5a:W (3.6) BS03 rna ? GO:0000398 ... O60508 35705093
    37 7w5a:X (3.6) BS01 rna ? GO:0005515 ... Q9GZU8 35705093
    38 7w5a:a (3.6) BS01 rna ? GO:0000243 ... P62318 35705093
    39 7w5a:b (3.6) BS01 rna ? GO:0000387 ... P14678 35705093
    40 7w5a:c (3.6) BS01 rna ? GO:0000243 ... P62314 35705093
    41 7w5a:d (3.6) BS01 rna ? GO:0000245 ... P62316 35705093
    42 7w5a:e (3.6) BS01 rna ? GO:0000245 ... P62304 35705093
    43 7w5a:f (3.6) BS01 rna ? GO:0000387 ... P62306 35705093
    44 7w5a:g (3.6) BS01 rna ? GO:0000245 ... P62308 35705093
    45 7w5a:h (3.6) BS01 rna ? GO:0000243 ... P62318 35705093
    46 7w5a:i (3.6) BS01 rna ? GO:0000387 ... P14678 35705093
    47 7w5a:j (3.6) BS01 rna ? GO:0000243 ... P62314 35705093
    48 7w5a:k (3.6) BS01 rna ? GO:0000245 ... P62316 35705093
    49 7w5a:l (3.6) BS01 rna ? GO:0000245 ... P62304 35705093
    50 7w5a:m (3.6) BS01 rna ? GO:0000387 ... P62306 35705093
    51 7w5a:n (3.6) BS01 rna ? GO:0000245 ... P62308 35705093
    52 7w5a:p (3.6) BS01 rna ? GO:0000398 ... P08579 35705093
    53 7w5a:y (3.6) BS01 rna 5.2.1.8 GO:0000398 ... Q9UNP9 35705093
    54 7w5a:z (3.6) BS01 rna ? GO:0003723 ... Q9Y421 35705093
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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