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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7vuw:A (1.6) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 37742916
    2 7vuw:A (1.6) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 37742916
    3 7vuw:A (1.6) BS03 CU 7.1.1.9 GO:0004129 ... P00396 37742916
    4 7vuw:A (1.6) BS04 MG 7.1.1.9 GO:0004129 ... P00396 37742916
    5 7vuw:A (1.6) BS05 CYN 7.1.1.9 GO:0004129 ... P00396 37742916
    6 7vuw:B (1.6) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 37742916
    7 7vuw:B (1.6) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 37742916
    8 7vuw:C (1.6) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 37742916
    9 7vuw:C (1.6) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 37742916
    10 7vuw:C (1.6) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 37742916
    11 7vuw:F (1.6) BS01 ZN ? GO:0005740 ... P00428 37742916
    12 7vuw:G (1.6) BS01 DMU ? GO:0005743 ... P07471 37742916
    13 7vuw:J (1.6) BS01 DMU ? GO:0006123 ... P07470 37742916
    14 7vuw:J (1.6) BS02 DMU ? GO:0006123 ... P07470 37742916
    15 7vuw:M (1.6) BS01 DMU ? GO:0006123 ... P10175 37742916
    16 7vuw:N (1.6) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 37742916
    17 7vuw:N (1.6) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 37742916
    18 7vuw:N (1.6) BS03 CU 7.1.1.9 GO:0004129 ... P00396 37742916
    19 7vuw:N (1.6) BS04 MG 7.1.1.9 GO:0004129 ... P00396 37742916
    20 7vuw:N (1.6) BS05 CYN 7.1.1.9 GO:0004129 ... P00396 37742916
    21 7vuw:O (1.6) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 37742916
    22 7vuw:O (1.6) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 37742916
    23 7vuw:O (1.6) BS03 DMU 7.1.1.9 GO:0004129 ... P68530 37742916
    24 7vuw:P (1.6) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 37742916
    25 7vuw:P (1.6) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 37742916
    26 7vuw:P (1.6) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 37742916
    27 7vuw:Q (1.6) BS01 DMU ? GO:0006123 ... P00423 37742916
    28 7vuw:S (1.6) BS01 ZN ? GO:0005740 ... P00428 37742916
    29 7vuw:T (1.6) BS01 DMU ? GO:0005743 ... P07471 37742916
    30 7vuw:W (1.6) BS01 DMU ? GO:0006123 ... P07470 37742916
    31 7vuw:W (1.6) BS02 DMU ? GO:0006123 ... P07470 37742916
    32 7vuw:X (1.6) BS01 DMU ? GO:0006123 ... P13183 37742916
    33 7vuw:X (1.6) BS02 DMU ? GO:0006123 ... P13183 37742916
    34 7vuw:X (1.6) BS03 DMU ? GO:0006123 ... P13183 37742916
    35 7vuw:Z (1.6) BS01 DMU ? GO:0006123 ... P10175 37742916
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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