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BioLiP
Download all results in tab-seperated text for 71 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7unr:1 (2.9) BS01 rna ? GO:0003735 ... Q9HWE3 N/A
    2 7unr:2 (2.9) BS01 rna ? GO:0003735 ... Q9HWF3 N/A
    3 7unr:2 (2.9) BS02 rna ? GO:0003735 ... Q9HWF3 N/A
    4 7unr:3 (2.9) BS01 rna ? GO:0003735 ... Q9HUD0 N/A
    5 7unr:3 (2.9) BS02 ZN ? GO:0003735 ... Q9HUD0 N/A
    6 7unr:4 (2.9) BS01 rna ? GO:0003735 ... Q9HZN4 N/A
    7 7unr:5 (2.9) BS01 rna ? GO:0000049 ... Q9HTN9 N/A
    8 7unr:6 (2.9) BS01 rna ? GO:0003735 ... P29436 N/A
    9 7unr:7 (2.9) BS01 rna ? GO:0003735 ... Q9I0A1 N/A
    10 7unr:8 (2.9) BS01 rna ? GO:0003735 ... Q9HWF6 N/A
    11 7unr:8 (2.9) BS02 ZN ? GO:0003735 ... Q9HWF6 N/A
    12 7unr:C (2.9) BS01 rna ? GO:0002181 ... Q9HWD8 N/A
    13 7unr:C (2.9) BS02 MG ? GO:0002181 ... Q9HWD8 N/A
    14 7unr:D (2.9) BS01 rna ? GO:0003735 ... Q9HWD5 N/A
    15 7unr:E (2.9) BS01 rna ? GO:0003735 ... Q9HWD6 N/A
    16 7unr:E (2.9) BS02 MG ? GO:0003735 ... Q9HWD6 N/A
    17 7unr:E (2.9) BS03 MG ? GO:0003735 ... Q9HWD6 N/A
    18 7unr:F (2.9) BS01 rna ? GO:0000049 ... Q9HWE7 N/A
    19 7unr:F (2.9) BS02 rna ? GO:0000049 ... Q9HWE7 N/A
    20 7unr:F (2.9) BS03 rna ? GO:0000049 ... Q9HWE7 N/A
    21 7unr:G (2.9) BS01 rna ? GO:0002181 ... Q9HWF0 N/A
    22 7unr:H (2.9) BS01 rna ? GO:0003735 ... Q9HUN2 N/A
    23 7unr:I (2.9) BS01 rna ? GO:0003735 ... Q9HWC7 N/A
    24 7unr:J (2.9) BS01 rna ? GO:0003735 ... Q9HWC5 N/A
    25 7unr:L (2.9) BS01 rna ? GO:0003729 ... Q9HVY2 N/A
    26 7unr:M (2.9) BS01 rna ? GO:0003735 ... Q9HWE5 N/A
    27 7unr:N (2.9) BS01 rna ? GO:0003735 ... Q9HWF4 N/A
    28 7unr:N (2.9) BS02 MG ? GO:0003735 ... Q9HWF4 N/A
    29 7unr:O (2.9) BS01 rna ? GO:0000049 ... Q9HWE2 N/A
    30 7unr:O (2.9) BS02 rna ? GO:0000049 ... Q9HWE2 N/A
    31 7unr:P (2.9) BS01 rna ? GO:0003735 ... O52761 N/A
    32 7unr:Q (2.9) BS01 rna ? GO:0003735 ... Q9HWF1 N/A
    33 7unr:Q (2.9) BS02 rna ? GO:0003735 ... Q9HWF1 N/A
    34 7unr:R (2.9) BS01 rna ? GO:0003735 ... Q9HXQ2 N/A
    35 7unr:R (2.9) BS02 rna ? GO:0003735 ... Q9HXQ2 N/A
    36 7unr:S (2.9) BS01 rna ? GO:0000027 ... Q9I0A2 N/A
    37 7unr:T (2.9) BS01 rna ? GO:0003723 ... Q9HVL6 N/A
    38 7unr:U (2.9) BS01 rna ? GO:0003735 ... A0A1T1HVZ5 N/A
    39 7unr:V (2.9) BS01 rna ? GO:0000027 ... Q9HWD7 N/A
    40 7unr:W (2.9) BS01 rna ? GO:0003723 ... Q9HWE6 N/A
    41 7unr:X (2.9) BS01 rna ? GO:0003723 ... Q9HVC4 N/A
    42 7unr:X (2.9) BS02 rna ? GO:0003723 ... Q9HVC4 N/A
    43 7unr:Y (2.9) BS01 rna ? GO:0003735 ... Q9HVL7 N/A
    44 7unr:Y (2.9) BS02 rna ? GO:0003735 ... Q9HVL7 N/A
    45 7unr:Y (2.9) BS03 MG ? GO:0003735 ... Q9HVL7 N/A
    46 7unr:Z (2.9) BS01 rna ? GO:0003735 ... Q9HTN8 N/A
    47 7unr:b (2.9) BS01 rna ? GO:0003735 ... O82850 N/A
    48 7unr:c (2.9) BS01 rna ? GO:0003676 ... Q9HWE1 N/A
    49 7unr:d (2.9) BS01 rna ? GO:0003723 ... O52759 N/A
    50 7unr:e (2.9) BS01 rna ? GO:0003723 ... Q9HWF2 N/A
    51 7unr:f (2.9) BS01 rna ? GO:0003735 ... Q9HUM9 N/A
    52 7unr:g (2.9) BS01 rna ? GO:0000028 ... Q9HWD1 N/A
    53 7unr:h (2.9) BS01 rna ? GO:0003735 ... Q9HWE9 N/A
    54 7unr:i (2.9) BS01 rna ? GO:0003723 ... Q9HVY3 N/A
    55 7unr:i (2.9) BS02 rna ? GO:0003723 ... Q9HVY3 N/A
    56 7unr:j (2.9) BS01 rna ? GO:0000049 ... Q9HWD4 N/A
    57 7unr:k (2.9) BS01 rna ? GO:0003735 ... Q9HWF8 N/A
    58 7unr:l (2.9) BS01 rna ? GO:0000049 ... Q9HWD0 N/A
    59 7unr:m (2.9) BS01 rna ? GO:0000049 ... Q9HWF7 N/A
    60 7unr:n (2.9) BS01 rna ? GO:0003735 ... Q9HWE8 N/A
    61 7unr:o (2.9) BS01 rna ? GO:0003735 ... Q9HV58 N/A
    62 7unr:o (2.9) BS02 rna ? GO:0003735 ... Q9HV58 N/A
    63 7unr:p (2.9) BS01 rna ? GO:0003735 ... Q9HXP9 N/A
    64 7unr:q (2.9) BS01 rna ? GO:0003735 ... Q9HWE4 N/A
    65 7unr:r (2.9) BS01 rna ? GO:0003735 ... Q9HUN0 N/A
    66 7unr:s (2.9) BS01 rna ? GO:0000028 ... Q9HWD9 N/A
    67 7unr:t (2.9) BS01 rna ? GO:0003723 ... Q9HVM1 N/A
    68 7unr:u (2.9) BS01 rna ? GO:0003735 ... Q9I5V8 N/A
    69 7unr:x (2.9) BS01 rna ? GO:0003743 ... Q9HV55 N/A
    70 7unr:x (2.9) BS02 rna ? GO:0003743 ... Q9HV55 N/A
    71 7unr:x (2.9) BS03 GDP ? GO:0003743 ... Q9HV55 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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