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BioLiP
Download all results in tab-seperated text for 78 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ug7:EF (2.58) BS01 rna 3.6.5.- GO:0003746 ... P0A6M8 35500116
    2 7ug7:EF (2.58) BS02 rna 3.6.5.- GO:0003746 ... P0A6M8 35500116
    3 7ug7:EF (2.58) BS03 rna 3.6.5.- GO:0003746 ... P0A6M8 35500116
    4 7ug7:EF (2.58) BS04 rna 3.6.5.- GO:0003746 ... P0A6M8 35500116
    5 7ug7:EF (2.58) BS05 peptide 3.6.5.- GO:0003746 ... P0A6M8 35500116
    6 7ug7:EF (2.58) BS06 GDP 3.6.5.- GO:0003746 ... P0A6M8 35500116
    7 7ug7:LA (2.58) BS01 rna ? GO:0000027 ... P0A7L0 35500116
    8 7ug7:LA (2.58) BS02 rna ? GO:0000027 ... P0A7L0 35500116
    9 7ug7:LB (2.58) BS01 rna ? GO:0000027 ... P60422 35500116
    10 7ug7:LB (2.58) BS02 rna ? GO:0000027 ... P60422 35500116
    11 7ug7:LB (2.58) BS03 MG ? GO:0000027 ... P60422 35500116
    12 7ug7:LB (2.58) BS04 MG ? GO:0000027 ... P60422 35500116
    13 7ug7:LB (2.58) BS05 MG ? GO:0000027 ... P60422 35500116
    14 7ug7:LB (2.58) BS06 MG ? GO:0000027 ... P60422 35500116
    15 7ug7:LC (2.58) BS01 rna ? GO:0000027 ... P60438 35500116
    16 7ug7:LD (2.58) BS01 rna ? GO:0001070 ... P60723 35500116
    17 7ug7:LE (2.58) BS01 rna ? GO:0000027 ... P62399 35500116
    18 7ug7:LE (2.58) BS02 rna ? GO:0000027 ... P62399 35500116
    19 7ug7:LE (2.58) BS03 rna ? GO:0000027 ... P62399 35500116
    20 7ug7:LF (2.58) BS01 rna ? GO:0000027 ... P0AG55 35500116
    21 7ug7:LI (2.58) BS01 rna ? GO:0002181 ... P0A7R1 35500116
    22 7ug7:LJ (2.58) BS01 rna ? GO:0002181 ... P0A7J3 35500116
    23 7ug7:LK (2.58) BS01 rna ? GO:0000027 ... P0A7J7 35500116
    24 7ug7:LM (2.58) BS01 rna ? GO:0002181 ... P0AA10 35500116
    25 7ug7:LN (2.58) BS01 rna ? GO:0002181 ... P0ADY3 35500116
    26 7ug7:LN (2.58) BS02 rna ? GO:0002181 ... P0ADY3 35500116
    27 7ug7:LO (2.58) BS01 rna ? GO:0002181 ... P02413 35500116
    28 7ug7:LP (2.58) BS01 rna ? GO:0000027 ... P0ADY7 35500116
    29 7ug7:LP (2.58) BS02 rna ? GO:0000027 ... P0ADY7 35500116
    30 7ug7:LQ (2.58) BS01 rna ? GO:0000027 ... P0AG44 35500116
    31 7ug7:LR (2.58) BS01 rna ? GO:0002181 ... P0C018 35500116
    32 7ug7:LR (2.58) BS02 rna ? GO:0002181 ... P0C018 35500116
    33 7ug7:LS (2.58) BS01 rna ? GO:0000027 ... P0A7K6 35500116
    34 7ug7:LS (2.58) BS02 rna ? GO:0000027 ... P0A7K6 35500116
    35 7ug7:LT (2.58) BS01 rna ? GO:0000027 ... P0A7L3 35500116
    36 7ug7:LU (2.58) BS01 rna ? GO:0002181 ... P0AG48 35500116
    37 7ug7:LV (2.58) BS01 rna ? GO:0002181 ... P61175 35500116
    38 7ug7:LW (2.58) BS01 rna ? GO:0000027 ... P0ADZ0 35500116
    39 7ug7:LX (2.58) BS01 rna ? GO:0000027 ... P60624 35500116
    40 7ug7:LX (2.58) BS02 MG ? GO:0000027 ... P60624 35500116
    41 7ug7:LY (2.58) BS01 rna ? GO:0000027 ... P68919 35500116
    42 7ug7:La (2.58) BS01 rna ? GO:0000027 ... P0A7L8 35500116
    43 7ug7:La (2.58) BS02 rna ? GO:0000027 ... P0A7L8 35500116
    44 7ug7:Lb (2.58) BS01 rna ? GO:0000027 ... P0A7M2 35500116
    45 7ug7:Lc (2.58) BS01 rna ? GO:0000027 ... P0A7M6 35500116
    46 7ug7:Ld (2.58) BS01 rna ? GO:0000027 ... P0AG51 35500116
    47 7ug7:Le (2.58) BS01 rna ? GO:0002181 ... P0A7M9 35500116
    48 7ug7:Le (2.58) BS02 rna ? GO:0002181 ... P0A7M9 35500116
    49 7ug7:Le (2.58) BS03 ZN ? GO:0002181 ... P0A7M9 35500116
    50 7ug7:Lf (2.58) BS01 rna ? GO:0000027 ... P0A7N4 35500116
    51 7ug7:Lg (2.58) BS01 rna ? GO:0000027 ... P0A7N9 35500116
    52 7ug7:Lh (2.58) BS01 rna ? GO:0002181 ... P0A7P5 35500116
    53 7ug7:Li (2.58) BS01 rna ? GO:0002181 ... P0A7Q1 35500116
    54 7ug7:Lj (2.58) BS01 rna ? GO:0002181 ... P0A7Q6 35500116
    55 7ug7:Lj (2.58) BS02 ZN ? GO:0002181 ... P0A7Q6 35500116
    56 7ug7:SB (2.58) BS01 rna ? GO:0000028 ... P0A7V0 35500116
    57 7ug7:SC (2.58) BS01 rna ? GO:0000028 ... P0A7V3 35500116
    58 7ug7:SD (2.58) BS01 rna ? GO:0000028 ... P0A7V8 35500116
    59 7ug7:SE (2.58) BS01 rna ? GO:0000028 ... P0A7W1 35500116
    60 7ug7:SF (2.58) BS01 rna ? GO:0002181 ... P02358 35500116
    61 7ug7:SG (2.58) BS01 rna ? GO:0000028 ... P02359 35500116
    62 7ug7:SH (2.58) BS01 rna ? GO:0000028 ... P0A7W7 35500116
    63 7ug7:SI (2.58) BS01 rna ? GO:0000049 ... P0A7X3 35500116
    64 7ug7:SI (2.58) BS02 rna ? GO:0000049 ... P0A7X3 35500116
    65 7ug7:SJ (2.58) BS01 rna ? GO:0000049 ... P0A7R5 35500116
    66 7ug7:SK (2.58) BS01 rna ? GO:0002181 ... P0A7R9 35500116
    67 7ug7:SL (2.58) BS01 rna ? GO:0000049 ... P0A7S3 35500116
    68 7ug7:SM (2.58) BS01 rna ? GO:0000049 ... P0A7S9 35500116
    69 7ug7:SN (2.58) BS01 rna ? GO:0000028 ... P0AG59 35500116
    70 7ug7:SO (2.58) BS01 rna ? GO:0000028 ... P0ADZ4 35500116
    71 7ug7:SO (2.58) BS02 rna ? GO:0000028 ... P0ADZ4 35500116
    72 7ug7:SP (2.58) BS01 rna ? GO:0000028 ... P0A7T3 35500116
    73 7ug7:SQ (2.58) BS01 rna ? GO:0000028 ... P0AG63 35500116
    74 7ug7:SR (2.58) BS01 rna ? GO:0002181 ... P0A7T7 35500116
    75 7ug7:SS (2.58) BS01 rna ? GO:0000028 ... P0A7U3 35500116
    76 7ug7:SS (2.58) BS02 rna ? GO:0000028 ... P0A7U3 35500116
    77 7ug7:ST (2.58) BS01 rna ? GO:0000028 ... P0A7U7 35500116
    78 7ug7:SU (2.58) BS01 rna ? GO:0000028 ... P68679 35500116
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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