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BioLiP
Download all results in tab-seperated text for 99 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ucj:A (3.1) BS01 rna ? GO:0002181 ... G1TT27 35679869
    2 7ucj:A (3.1) BS02 rna ? GO:0002181 ... G1TT27 35679869
    3 7ucj:AA (3.1) BS01 rna ? GO:0003735 ... G1TJH8 35679869
    4 7ucj:Aa (3.1) BS01 rna ? GO:0003735 ... G1TFE8 35679869
    5 7ucj:Aa (3.1) BS02 ZN ? GO:0003735 ... G1TFE8 35679869
    6 7ucj:B (3.1) BS01 rna ? GO:0003723 ... G1TL06 35679869
    7 7ucj:BB (3.1) BS01 rna ? GO:0003735 ... G1SS70 35679869
    8 7ucj:Bb (3.1) BS01 rna ? GO:0000028 ... G1TZ76 35679869
    9 7ucj:C (3.1) BS01 rna ? GO:0003723 ... A0A5F9DCT1 35679869
    10 7ucj:C (3.1) BS02 rna ? GO:0003723 ... A0A5F9DCT1 35679869
    11 7ucj:CC (3.1) BS01 rna N/A GO:0003723 ... N/A 35679869
    12 7ucj:Cc (3.1) BS01 rna ? GO:0000028 ... G1TIB4 35679869
    13 7ucj:D (3.1) BS01 rna ? GO:0000027 ... P19949 35679869
    14 7ucj:D (3.1) BS02 rna ? GO:0000027 ... P19949 35679869
    15 7ucj:DD (3.1) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 35679869
    16 7ucj:Dd (3.1) BS01 rna ? GO:0003735 ... G1U7M4 35679869
    17 7ucj:E (3.1) BS01 rna ? GO:0003735 ... G1SKF7 35679869
    18 7ucj:EE (3.1) BS01 rna ? GO:0003723 ... G1TA47 35679869
    19 7ucj:Ee (3.1) BS01 rna ? GO:0003735 ... G1T8A2 35679869
    20 7ucj:F (3.1) BS01 rna ? GO:0000463 ... G1SV32 35679869
    21 7ucj:F (3.1) BS02 rna ? GO:0000463 ... G1SV32 35679869
    22 7ucj:FF (3.1) BS01 rna ? GO:0000028 ... G1TFM5 35679869
    23 7ucj:FF (3.1) BS02 MG ? GO:0000028 ... G1TFM5 35679869
    24 7ucj:G (3.1) BS01 rna N/A GO:0042254 ... N/A 35679869
    25 7ucj:G (3.1) BS02 rna N/A GO:0042254 ... N/A 35679869
    26 7ucj:GG (3.1) BS01 rna ? GO:0000082 ... G1TM55 35679869
    27 7ucj:Gg (3.1) BS01 rna ? GO:0001891 ... G1SJB4 35679869
    28 7ucj:H (3.1) BS01 rna ? GO:0002181 ... G1SWI6 35679869
    29 7ucj:HH (3.1) BS01 rna N/A GO:0003735 ... N/A 35679869
    30 7ucj:I (3.1) BS01 rna ? GO:0000027 ... B7NZQ2 35679869
    31 7ucj:I (3.1) BS02 rna ? GO:0000027 ... B7NZQ2 35679869
    32 7ucj:II (3.1) BS01 rna ? GO:0000462 ... G1TJW1 35679869
    33 7ucj:II (3.1) BS02 rna ? GO:0000462 ... G1TJW1 35679869
    34 7ucj:J (3.1) BS01 rna ? GO:0003723 ... G1TUB8 35679869
    35 7ucj:J (3.1) BS02 rna ? GO:0003723 ... G1TUB8 35679869
    36 7ucj:J (3.1) BS03 rna ? GO:0003723 ... G1TUB8 35679869
    37 7ucj:JJ (3.1) BS01 rna ? GO:0003723 ... B7NZS8 35679869
    38 7ucj:KK (3.1) BS01 rna ? N/A G1TPV3 35679869
    39 7ucj:L (3.1) BS01 rna N/A GO:0003735 ... N/A 35679869
    40 7ucj:L (3.1) BS02 rna N/A GO:0003735 ... N/A 35679869
    41 7ucj:LL (3.1) BS01 rna ? GO:0003735 ... G1TRM4 35679869
    42 7ucj:M (3.1) BS01 rna ? GO:0003723 ... G1SZ12 35679869
    43 7ucj:N (3.1) BS01 rna ? GO:0002181 ... G1T0C1 35679869
    44 7ucj:N (3.1) BS02 rna ? GO:0002181 ... G1T0C1 35679869
    45 7ucj:NN (3.1) BS01 rna ? GO:0003735 ... G1SP51 35679869
    46 7ucj:O (3.1) BS01 rna N/A GO:0003735 ... N/A 35679869
    47 7ucj:OO (3.1) BS01 rna ? GO:0000028 ... G1T1F0 35679869
    48 7ucj:P (3.1) BS01 rna ? GO:0003735 ... G1SCJ6 35679869
    49 7ucj:P (3.1) BS02 rna ? GO:0003735 ... G1SCJ6 35679869
    50 7ucj:PP (3.1) BS01 rna ? GO:0003723 ... G1U0Q2 35679869
    51 7ucj:Q (3.1) BS01 rna N/A GO:0003735 ... N/A 35679869
    52 7ucj:QQ (3.1) BS01 rna N/A GO:0003735 ... N/A 35679869
    53 7ucj:R (3.1) BS01 rna ? GO:0003723 ... G1TYL6 35679869
    54 7ucj:R (3.1) BS02 rna ? GO:0003723 ... G1TYL6 35679869
    55 7ucj:RR (3.1) BS01 rna ? GO:0003735 ... G1TU13 35679869
    56 7ucj:S (3.1) BS01 rna N/A GO:0003735 ... N/A 35679869
    57 7ucj:S (3.1) BS02 rna N/A GO:0003735 ... N/A 35679869
    58 7ucj:SS (3.1) BS01 rna ? GO:0003676 ... G1TPG3 35679869
    59 7ucj:T (3.1) BS01 rna ? GO:0003735 ... G1SHQ2 35679869
    60 7ucj:T (3.1) BS02 rna ? GO:0003735 ... G1SHQ2 35679869
    61 7ucj:TT (3.1) BS01 rna N/A GO:0003735 ... N/A 35679869
    62 7ucj:U (3.1) BS01 rna N/A GO:0003735 ... N/A 35679869
    63 7ucj:UU (3.1) BS01 rna ? GO:0003723 ... G1SIZ2 35679869
    64 7ucj:V (3.1) BS01 rna ? GO:0000122 ... G1T6D1 35679869
    65 7ucj:W (3.1) BS01 rna ? N/A G1SE28 35679869
    66 7ucj:WW (3.1) BS01 rna ? GO:0003735 ... G1TG89 35679869
    67 7ucj:X (3.1) BS01 rna N/A GO:0003735 ... N/A 35679869
    68 7ucj:X (3.1) BS02 rna N/A GO:0003735 ... N/A 35679869
    69 7ucj:XX (3.1) BS01 rna ? GO:0003735 ... G1SZ47 35679869
    70 7ucj:Y (3.1) BS01 rna ? GO:0002181 ... G1SQH0 35679869
    71 7ucj:Y (3.1) BS02 rna ? GO:0002181 ... G1SQH0 35679869
    72 7ucj:YY (3.1) BS01 rna ? GO:0003735 ... G1T3D8 35679869
    73 7ucj:Z (3.1) BS01 rna ? GO:0003735 ... G1TXF6 35679869
    74 7ucj:ZZ (3.1) BS01 rna ? N/A G1TDB3 35679869
    75 7ucj:a (3.1) BS01 rna ? GO:0003735 ... G1SNY0 35679869
    76 7ucj:b (3.1) BS01 rna ? GO:0003735 ... G1SGR6 35679869
    77 7ucj:c (3.1) BS01 rna ? GO:0003723 ... G1TDL2 35679869
    78 7ucj:d (3.1) BS01 rna ? GO:0003735 ... G1SHG0 35679869
    79 7ucj:e (3.1) BS01 rna ? GO:0003735 ... G1TUN8 35679869
    80 7ucj:f (3.1) BS01 rna ? GO:0000049 ... G1SF08 35679869
    81 7ucj:g (3.1) BS01 rna ? GO:0003735 ... G1TXG5 35679869
    82 7ucj:g (3.1) BS02 MG ? GO:0003735 ... G1TXG5 35679869
    83 7ucj:g (3.1) BS03 ZN ? GO:0003735 ... G1TXG5 35679869
    84 7ucj:h (3.1) BS01 rna ? GO:0000463 ... G1SIT5 35679869
    85 7ucj:h (3.1) BS02 rna ? GO:0000463 ... G1SIT5 35679869
    86 7ucj:i (3.1) BS01 rna ? GO:0002181 ... G1TTQ5 35679869
    87 7ucj:j (3.1) BS01 rna ? GO:0003735 ... U3KPD5 35679869
    88 7ucj:j (3.1) BS02 rna ? GO:0003735 ... U3KPD5 35679869
    89 7ucj:j (3.1) BS03 ZN ? GO:0003735 ... U3KPD5 35679869
    90 7ucj:k (3.1) BS01 rna N/A GO:0003735 ... N/A 35679869
    91 7ucj:l (3.1) BS01 rna ? GO:0003735 ... G1TTN1 35679869
    92 7ucj:l (3.1) BS02 rna ? GO:0003735 ... G1TTN1 35679869
    93 7ucj:m (3.1) BS01 rna N/A GO:0003735 ... N/A 35679869
    94 7ucj:m (3.1) BS02 ZN N/A GO:0003735 ... N/A 35679869
    95 7ucj:o (3.1) BS01 rna ? GO:0003735 ... G1T040 35679869
    96 7ucj:o (3.1) BS02 ZN ? GO:0003735 ... G1T040 35679869
    97 7ucj:p (3.1) BS01 rna ? GO:0003735 ... G1SY53 35679869
    98 7ucj:p (3.1) BS02 ZN ? GO:0003735 ... G1SY53 35679869
    99 7ucj:r (3.1) BS01 rna ? GO:0003735 ... G1U7L1 35679869
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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