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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7tql:1 (3.2) BS01 rna 3.6.5.3 GO:0003924 ... O60841 35732735
    2 7tql:1 (3.2) BS02 rna 3.6.5.3 GO:0003924 ... O60841 35732735
    3 7tql:1 (3.2) BS03 GNP 3.6.5.3 GO:0003924 ... O60841 35732735
    4 7tql:4 (3.2) BS01 rna ? GO:0003723 ... P47813 35732735
    5 7tql:B (3.2) BS01 rna ? GO:0003735 ... P08865
    P61247    		 35732735
    6 7tql:C (3.2) BS01 rna ? GO:0003735 ... P08865
    P61247    		 35732735
    7 7tql:D (3.2) BS01 rna ? GO:0003723 ... P15880 35732735
    8 7tql:E (3.2) BS01 rna ? GO:0002181 ... P62701 35732735
    9 7tql:F (3.2) BS01 rna 4.2.99.18 GO:0000977 ... P23396 35732735
    10 7tql:G (3.2) BS01 rna ? GO:0000082 ... P62753 35732735
    11 7tql:H (3.2) BS01 rna ? GO:0001843 ... P62081 35732735
    12 7tql:I (3.2) BS01 rna ? GO:0000462 ... P62241 35732735
    13 7tql:J (3.2) BS01 rna ? GO:0002181 ... P46781 35732735
    14 7tql:K (3.2) BS01 rna ? GO:0000028 ... P46782 35732735
    15 7tql:L (3.2) BS01 rna ? GO:0002181 ... P62280 35732735
    16 7tql:M (3.2) BS01 rna ? N/A P46783 35732735
    17 7tql:N (3.2) BS01 rna ? GO:0002181 ... P62277 35732735
    18 7tql:O (3.2) BS01 rna ? GO:0002181 ... P25398 35732735
    19 7tql:P (3.2) BS01 rna ? GO:0003735 ... P62263 35732735
    20 7tql:Q (3.2) BS01 rna ? GO:0003723 ... P62841 35732735
    21 7tql:R (3.2) BS01 rna ? GO:0000462 ... P62249 35732735
    22 7tql:S (3.2) BS01 rna ? GO:0002181 ... P08708 35732735
    23 7tql:T (3.2) BS01 rna ? GO:0002181 ... P62269 35732735
    24 7tql:U (3.2) BS01 rna ? GO:0000028 ... P39019 35732735
    25 7tql:V (3.2) BS01 rna ? GO:0003723 ... P60866 35732735
    26 7tql:W (3.2) BS01 rna ? GO:0002181 ... P62244 35732735
    27 7tql:X (3.2) BS01 rna ? GO:0002181 ... P62266 35732735
    28 7tql:Y (3.2) BS01 rna ? GO:0002181 ... P62847 35732735
    29 7tql:a (3.2) BS01 rna ? N/A P62851 35732735
    30 7tql:b (3.2) BS01 rna ? GO:0000028 ... P42677 35732735
    31 7tql:c (3.2) BS01 rna ? GO:0003735 ... P62854 35732735
    32 7tql:c (3.2) BS02 ZN ? GO:0003735 ... P62854 35732735
    33 7tql:d (3.2) BS01 rna ? GO:0003735 ... P62857 35732735
    34 7tql:e (3.2) BS01 rna ? GO:0003735 ... P62861 35732735
    35 7tql:f (3.2) BS01 rna ? GO:0002181 ... P62273 35732735
    36 7tql:f (3.2) BS02 ZN ? GO:0002181 ... P62273 35732735
    37 7tql:g (3.2) BS01 rna ? GO:0003735 ... P62979 35732735
    38 7tql:g (3.2) BS02 ZN ? GO:0003735 ... P62979 35732735
    39 7tql:j (3.2) BS01 rna ? GO:0001891 ... P63244 35732735
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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