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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7tos:L02 (2.9) BS01 rna ? GO:0000027 ... P60422 35589706
    2 7tos:L03 (2.9) BS01 rna ? GO:0000027 ... P60438 35589706
    3 7tos:L04 (2.9) BS01 rna ? GO:0001070 ... P60723 35589706
    4 7tos:L05 (2.9) BS01 rna ? GO:0000027 ... P62399 35589706
    5 7tos:L05 (2.9) BS02 rna ? GO:0000027 ... P62399 35589706
    6 7tos:L06 (2.9) BS01 rna ? GO:0000027 ... P0AG55 35589706
    7 7tos:L09 (2.9) BS01 rna ? GO:0002181 ... P0A7R1 35589706
    8 7tos:L1 (2.9) BS01 rna ? GO:0000027 ... P0A7L0 35589706
    9 7tos:L10 (2.9) BS01 rna ? GO:0003735 ... P0A7J3 35589706
    10 7tos:L11 (2.9) BS01 rna ? GO:0000027 ... P0A7J7 35589706
    11 7tos:L13 (2.9) BS01 rna ? GO:0002181 ... P0AA10 35589706
    12 7tos:L14 (2.9) BS01 rna ? GO:0002181 ... P0ADY3 35589706
    13 7tos:L14 (2.9) BS02 rna ? GO:0002181 ... P0ADY3 35589706
    14 7tos:L15 (2.9) BS01 rna ? GO:0002181 ... P02413 35589706
    15 7tos:L16 (2.9) BS01 rna ? GO:0000027 ... P0ADY7 35589706
    16 7tos:L16 (2.9) BS02 rna ? GO:0000027 ... P0ADY7 35589706
    17 7tos:L17 (2.9) BS01 rna ? GO:0000027 ... P0AG44 35589706
    18 7tos:L18 (2.9) BS01 rna ? GO:0002181 ... P0C018 35589706
    19 7tos:L18 (2.9) BS02 rna ? GO:0002181 ... P0C018 35589706
    20 7tos:L19 (2.9) BS01 rna ? GO:0000027 ... P0A7K6 35589706
    21 7tos:L19 (2.9) BS02 rna ? GO:0000027 ... P0A7K6 35589706
    22 7tos:L20 (2.9) BS01 rna ? GO:0000027 ... P0A7L3 35589706
    23 7tos:L21 (2.9) BS01 rna ? GO:0002181 ... P0AG48 35589706
    24 7tos:L22 (2.9) BS01 rna ? GO:0002181 ... P61175 35589706
    25 7tos:L23 (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 35589706
    26 7tos:L24 (2.9) BS01 rna ? GO:0000027 ... P60624 35589706
    27 7tos:L25 (2.9) BS01 rna ? GO:0000027 ... P68919 35589706
    28 7tos:L27 (2.9) BS01 rna ? GO:0003735 ... P0A7L8 35589706
    29 7tos:L27 (2.9) BS02 rna ? GO:0003735 ... P0A7L8 35589706
    30 7tos:L28 (2.9) BS01 rna ? GO:0000027 ... P0A7M2 35589706
    31 7tos:L29 (2.9) BS01 rna ? GO:0000027 ... P0A7M6 35589706
    32 7tos:L30 (2.9) BS01 rna ? GO:0000027 ... P0AG51 35589706
    33 7tos:L30 (2.9) BS02 rna ? GO:0000027 ... P0AG51 35589706
    34 7tos:L31 (2.9) BS01 rna ? GO:0002181 ... P0A7M9 35589706
    35 7tos:L32 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 35589706
    36 7tos:L33 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 35589706
    37 7tos:L34 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 35589706
    38 7tos:L35 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 35589706
    39 7tos:L36 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 35589706
    40 7tos:S02 (2.9) BS01 rna ? GO:0000028 ... P0A7V0 35589706
    41 7tos:S03 (2.9) BS01 rna ? GO:0003676 ... P0A7V3 35589706
    42 7tos:S04 (2.9) BS01 rna ? GO:0000028 ... P0A7V8 35589706
    43 7tos:S05 (2.9) BS01 rna ? GO:0000028 ... P0A7W1 35589706
    44 7tos:S06 (2.9) BS01 rna ? GO:0003735 ... P02358 35589706
    45 7tos:S07 (2.9) BS01 rna ? GO:0003723 ... P02359 35589706
    46 7tos:S08 (2.9) BS01 rna ? GO:0000028 ... P0A7W7 35589706
    47 7tos:S09 (2.9) BS01 rna ? GO:0000049 ... P0A7X3 35589706
    48 7tos:S10 (2.9) BS01 rna ? GO:0000049 ... P0A7R5 35589706
    49 7tos:S11 (2.9) BS01 rna ? GO:0002181 ... P0A7R9 35589706
    50 7tos:S12 (2.9) BS01 rna ? GO:0000049 ... P0A7S3 35589706
    51 7tos:S13 (2.9) BS01 rna ? GO:0000049 ... P0A7S9 35589706
    52 7tos:S13 (2.9) BS02 rna ? GO:0000049 ... P0A7S9 35589706
    53 7tos:S14 (2.9) BS01 rna ? GO:0000028 ... P0AG59 35589706
    54 7tos:S15 (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 35589706
    55 7tos:S15 (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 35589706
    56 7tos:S16 (2.9) BS01 rna ? GO:0000028 ... P0A7T3 35589706
    57 7tos:S17 (2.9) BS01 rna ? GO:0000028 ... P0AG63 35589706
    58 7tos:S18 (2.9) BS01 rna ? GO:0003735 ... P0A7T7 35589706
    59 7tos:S19 (2.9) BS01 rna ? GO:0003723 ... P0A7U3 35589706
    60 7tos:S20 (2.9) BS01 rna ? GO:0000028 ... P0A7U7 35589706
    61 7tos:S21 (2.9) BS01 rna ? GO:0000028 ... P68679 35589706
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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