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BioLiP Library
Download all results in tab-seperated text for 54 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7tns:A4 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    2 7tns:A5 (6.7) BS01 peptide ? GO:0000226 ... A0A125YWG5 35121661
    3 7tns:A6 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    4 7tns:A7 (6.7) BS01 peptide ? GO:0000226 ... A0A125YWG5 35121661
    5 7tns:A8 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    6 7tns:A9 (6.7) BS01 peptide ? GO:0000226 ... A0A125YWG5 35121661
    7 7tns:B0 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    8 7tns:B1 (6.7) BS01 peptide ? GO:0000226 ... A0A125YWG5 35121661
    9 7tns:B2 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    10 7tns:B4 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    11 7tns:B5 (6.7) BS01 peptide ? GO:0000226 ... A0A125YWG5 35121661
    12 7tns:B6 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    13 7tns:B8 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    14 7tns:B9 (6.7) BS01 peptide ? GO:0000226 ... A0A125YWG5 35121661
    15 7tns:C0 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    16 7tns:C1 (6.7) BS01 peptide ? GO:0000226 ... A0A125YWG5 35121661
    17 7tns:C2 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    18 7tns:C3 (6.7) BS01 peptide ? GO:0000226 ... A0A125YWG5 35121661
    19 7tns:C4 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    20 7tns:C5 (6.7) BS01 peptide ? GO:0000226 ... A0A125YWG5 35121661
    21 7tns:C6 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    22 7tns:C7 (6.7) BS01 peptide ? GO:0000226 ... A0A125YWG5 35121661
    23 7tns:C8 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    24 7tns:C9 (6.7) BS01 peptide ? GO:0000226 ... A0A125YWG5 35121661
    25 7tns:D0 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    26 7tns:D1 (6.7) BS01 peptide ? GO:0000226 ... A0A125YWG5 35121661
    27 7tns:D2 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    28 7tns:D4 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    29 7tns:D7 (6.7) BS01 peptide ? GO:0000226 ... A0A125YWG5 35121661
    30 7tns:D8 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    31 7tns:D9 (6.7) BS01 peptide ? GO:0000226 ... A0A125YWG5 35121661
    32 7tns:E0 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    33 7tns:E1 (6.7) BS01 peptide ? GO:0000226 ... A0A125YWG5 35121661
    34 7tns:E2 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    35 7tns:E3 (6.7) BS01 peptide ? GO:0000226 ... A0A125YWG5 35121661
    36 7tns:E4 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    37 7tns:E5 (6.7) BS01 peptide ? GO:0000226 ... A0A125YWG5 35121661
    38 7tns:E6 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    39 7tns:E7 (6.7) BS01 peptide ? GO:0000226 ... A0A125YWG5 35121661
    40 7tns:E8 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    41 7tns:E9 (6.7) BS01 peptide ? GO:0000226 ... A0A125YWG5 35121661
    42 7tns:F0 (6.7) BS01 peptide 3.6.5.- GO:0000226 ... P10873 35121661
    43 7tns:F1 (6.7) BS01 peptide ? GO:0000226 ... A0A125YWG5 35121661
    44 7tns:c (6.7) BS01 peptide 1.8.1.8 GO:0004791 ... A0A125YMM3 35121661
    45 7tns:d (6.7) BS01 peptide 1.8.1.8 GO:0004791 ... A0A125YMM3 35121661
    46 7tns:f (6.7) BS01 peptide 1.8.1.8 GO:0004791 ... A0A125YMM3 35121661
    47 7tns:g (6.7) BS01 peptide 1.8.1.8 GO:0004791 ... A0A125YMM3 35121661
    48 7tns:h (6.7) BS01 peptide 1.8.1.8 GO:0004791 ... A0A125YMM3 35121661
    49 7tns:m (6.7) BS01 peptide 1.8.1.8 GO:0004791 ... A0A125YMM3 35121661
    50 7tns:o (6.7) BS01 peptide 1.8.1.8 GO:0004791 ... A0A125YMM3 35121661
    51 7tns:s (6.7) BS01 peptide 1.8.1.8 GO:0004791 ... A0A125YMM3 35121661
    52 7tns:t (6.7) BS01 peptide 1.8.1.8 GO:0004791 ... A0A125YMM3 35121661
    53 7tns:v (6.7) BS01 peptide 1.8.1.8 GO:0004791 ... A0A125YMM3 35121661
    54 7tns:y (6.7) BS01 peptide 1.8.1.8 GO:0004791 ... A0A125YMM3 35121661
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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