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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7tfa:B (2.07) BS01 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    2 7tfa:B (2.07) BS02 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    3 7tfa:B (2.07) BS03 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    4 7tfa:B (2.07) BS04 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    5 7tfa:B (2.07) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    6 7tfa:E (2.07) BS01 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    7 7tfa:E (2.07) BS02 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    8 7tfa:E (2.07) BS03 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    9 7tfa:E (2.07) BS04 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    10 7tfa:E (2.07) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    11 7tfa:F (2.07) BS01 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    12 7tfa:F (2.07) BS02 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    13 7tfa:F (2.07) BS03 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    14 7tfa:F (2.07) BS04 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    15 7tfa:F (2.07) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    16 7tfa:J (2.07) BS01 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    17 7tfa:J (2.07) BS02 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    18 7tfa:J (2.07) BS03 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    19 7tfa:J (2.07) BS04 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    20 7tfa:J (2.07) BS05 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    21 7tfa:J (2.07) BS06 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    22 7tfa:K (2.07) BS01 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    23 7tfa:K (2.07) BS02 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    24 7tfa:K (2.07) BS03 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    25 7tfa:K (2.07) BS04 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    26 7tfa:K (2.07) BS05 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    27 7tfa:K (2.07) BS06 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    28 7tfa:L (2.07) BS01 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    29 7tfa:L (2.07) BS02 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    30 7tfa:L (2.07) BS03 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    31 7tfa:L (2.07) BS04 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    32 7tfa:L (2.07) BS05 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    33 7tfa:L (2.07) BS06 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    34 7tfa:Q (2.07) BS01 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    35 7tfa:Q (2.07) BS02 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    36 7tfa:Q (2.07) BS03 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    37 7tfa:Q (2.07) BS04 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    38 7tfa:Q (2.07) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    39 7tfa:R (2.07) BS01 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    40 7tfa:R (2.07) BS02 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    41 7tfa:R (2.07) BS03 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    42 7tfa:R (2.07) BS04 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    43 7tfa:R (2.07) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    44 7tfa:S (2.07) BS01 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    45 7tfa:S (2.07) BS02 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    46 7tfa:S (2.07) BS03 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    47 7tfa:S (2.07) BS04 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    48 7tfa:S (2.07) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    49 7tfa:T (2.07) BS01 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    50 7tfa:T (2.07) BS02 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    51 7tfa:T (2.07) BS03 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    52 7tfa:T (2.07) BS04 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    53 7tfa:T (2.07) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    54 7tfa:W (2.07) BS01 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    55 7tfa:W (2.07) BS02 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    56 7tfa:W (2.07) BS03 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    57 7tfa:W (2.07) BS04 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    58 7tfa:W (2.07) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    59 7tfa:X (2.07) BS01 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    60 7tfa:X (2.07) BS02 peptide 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    61 7tfa:X (2.07) BS03 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    62 7tfa:X (2.07) BS04 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    63 7tfa:X (2.07) BS05 GLN 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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