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BioLiP
Download all results in tab-seperated text for 75 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7sa4:8 (2.55) BS01 rna ? GO:0003747 ... P0DX90 35858322
    2 7sa4:8 (2.55) BS02 rna ? GO:0003747 ... P0DX90 35858322
    3 7sa4:8 (2.55) BS03 rna ? GO:0003747 ... P0DX90 35858322
    4 7sa4:B (2.55) BS01 rna ? GO:0000027 ... P60422 35858322
    5 7sa4:C (2.55) BS01 rna ? GO:0000027 ... P60438 35858322
    6 7sa4:D (2.55) BS01 rna ? GO:0001070 ... P60723 35858322
    7 7sa4:E (2.55) BS01 rna ? GO:0000027 ... P62399 35858322
    8 7sa4:E (2.55) BS02 rna ? GO:0000027 ... P62399 35858322
    9 7sa4:E (2.55) BS03 rna ? GO:0000027 ... P62399 35858322
    10 7sa4:F (2.55) BS01 rna ? GO:0000027 ... P0AG55 35858322
    11 7sa4:G (2.55) BS01 rna ? GO:0002181 ... P0A7R1 35858322
    12 7sa4:H (2.55) BS01 rna ? GO:0002181 ... P0A7J3 35858322
    13 7sa4:I (2.55) BS01 rna ? GO:0000027 ... P0A7J7 35858322
    14 7sa4:J (2.55) BS01 rna ? GO:0002181 ... P0AA10 35858322
    15 7sa4:K (2.55) BS01 rna ? GO:0002181 ... P0ADY3 35858322
    16 7sa4:K (2.55) BS02 rna ? GO:0002181 ... P0ADY3 35858322
    17 7sa4:L (2.55) BS01 rna ? GO:0002181 ... P02413 35858322
    18 7sa4:M (2.55) BS01 rna ? GO:0000027 ... P0ADY7 35858322
    19 7sa4:M (2.55) BS02 rna ? GO:0000027 ... P0ADY7 35858322
    20 7sa4:N (2.55) BS01 rna ? GO:0000027 ... P0AG44 35858322
    21 7sa4:O (2.55) BS01 rna ? GO:0002181 ... P0C018 35858322
    22 7sa4:O (2.55) BS02 rna ? GO:0002181 ... P0C018 35858322
    23 7sa4:P (2.55) BS01 rna ? GO:0000027 ... P0A7K6 35858322
    24 7sa4:P (2.55) BS02 rna ? GO:0000027 ... P0A7K6 35858322
    25 7sa4:Q (2.55) BS01 rna ? GO:0000027 ... P0A7L3 35858322
    26 7sa4:R (2.55) BS01 rna ? GO:0002181 ... P0AG48 35858322
    27 7sa4:S (2.55) BS01 rna ? GO:0002181 ... P61175 35858322
    28 7sa4:T (2.55) BS01 rna ? GO:0000027 ... P0ADZ0 35858322
    29 7sa4:U (2.55) BS01 rna ? GO:0000027 ... P60624 35858322
    30 7sa4:U (2.55) BS02 MG ? GO:0000027 ... P60624 35858322
    31 7sa4:V (2.55) BS01 rna ? GO:0000027 ... P68919 35858322
    32 7sa4:V (2.55) BS02 rna ? GO:0000027 ... P68919 35858322
    33 7sa4:W (2.55) BS01 rna ? GO:0000027 ... P0A7L8 35858322
    34 7sa4:W (2.55) BS02 rna ? GO:0000027 ... P0A7L8 35858322
    35 7sa4:X (2.55) BS01 rna ? GO:0000027 ... P0A7M2 35858322
    36 7sa4:Y (2.55) BS01 rna ? GO:0000027 ... P0A7M6 35858322
    37 7sa4:Z (2.55) BS01 rna ? GO:0000027 ... P0AG51 35858322
    38 7sa4:Z (2.55) BS02 rna ? GO:0000027 ... P0AG51 35858322
    39 7sa4:a (2.55) BS01 rna ? GO:0002181 ... P0A7M9 35858322
    40 7sa4:a (2.55) BS02 rna ? GO:0002181 ... P0A7M9 35858322
    41 7sa4:a (2.55) BS03 ZN ? GO:0002181 ... P0A7M9 35858322
    42 7sa4:b (2.55) BS01 rna ? GO:0000027 ... P0A7N4 35858322
    43 7sa4:c (2.55) BS01 rna ? GO:0000027 ... P0A7N9 35858322
    44 7sa4:d (2.55) BS01 rna ? GO:0002181 ... P0A7P5 35858322
    45 7sa4:e (2.55) BS01 rna ? GO:0002181 ... P0A7Q1 35858322
    46 7sa4:f (2.55) BS01 rna ? GO:0002181 ... P0A7Q6 35858322
    47 7sa4:f (2.55) BS02 ZN ? GO:0002181 ... P0A7Q6 35858322
    48 7sa4:g (2.55) BS01 rna ? GO:0000028 ... P0A7V0 35858322
    49 7sa4:h (2.55) BS01 rna ? GO:0000028 ... P0A7V3 35858322
    50 7sa4:h (2.55) BS02 rna ? GO:0000028 ... P0A7V3 35858322
    51 7sa4:i (2.55) BS01 rna ? GO:0000028 ... P0A7V8 35858322
    52 7sa4:i (2.55) BS02 MG ? GO:0000028 ... P0A7V8 35858322
    53 7sa4:j (2.55) BS01 rna ? GO:0000028 ... P0A7W1 35858322
    54 7sa4:k (2.55) BS01 rna ? GO:0002181 ... P02358 35858322
    55 7sa4:l (2.55) BS01 rna ? GO:0000028 ... P02359 35858322
    56 7sa4:l (2.55) BS02 rna ? GO:0000028 ... P02359 35858322
    57 7sa4:l (2.55) BS03 rna ? GO:0000028 ... P02359 35858322
    58 7sa4:m (2.55) BS01 rna ? GO:0000028 ... P0A7W7 35858322
    59 7sa4:n (2.55) BS01 rna ? GO:0000049 ... P0A7X3 35858322
    60 7sa4:n (2.55) BS02 rna ? GO:0000049 ... P0A7X3 35858322
    61 7sa4:o (2.55) BS01 rna ? GO:0000049 ... P0A7R5 35858322
    62 7sa4:p (2.55) BS01 rna ? GO:0002181 ... P0A7R9 35858322
    63 7sa4:q (2.55) BS01 rna ? GO:0000049 ... P0A7S3 35858322
    64 7sa4:r (2.55) BS01 rna ? GO:0000049 ... P0A7S9 35858322
    65 7sa4:r (2.55) BS02 rna ? GO:0000049 ... P0A7S9 35858322
    66 7sa4:r (2.55) BS03 MG ? GO:0000049 ... P0A7S9 35858322
    67 7sa4:s (2.55) BS01 rna ? GO:0000028 ... P0AG59 35858322
    68 7sa4:t (2.55) BS01 rna ? GO:0000028 ... P0ADZ4 35858322
    69 7sa4:t (2.55) BS02 rna ? GO:0000028 ... P0ADZ4 35858322
    70 7sa4:u (2.55) BS01 rna ? GO:0000028 ... P0A7T3 35858322
    71 7sa4:v (2.55) BS01 rna ? GO:0000028 ... P0AG63 35858322
    72 7sa4:w (2.55) BS01 rna ? GO:0002181 ... P0A7T7 35858322
    73 7sa4:x (2.55) BS01 rna ? GO:0000028 ... P0A7U3 35858322
    74 7sa4:y (2.55) BS01 rna ? GO:0000028 ... P0A7U7 35858322
    75 7sa4:z (2.55) BS01 rna ? GO:0000028 ... P68679 35858322
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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