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BioLiP
Download all results in tab-seperated text for 45 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7s0s:B (3.05) BS01 rna 2.1.1.226
    2.1.1.227    		 GO:0003723 ... P9WJ63 35357969
    2 7s0s:D (3.05) BS01 rna ? GO:0002181 ... A0QSD4 35357969
    3 7s0s:D (3.05) BS02 MG ? GO:0002181 ... A0QSD4 35357969
    4 7s0s:D (3.05) BS03 MG ? GO:0002181 ... A0QSD4 35357969
    5 7s0s:D (3.05) BS04 MG ? GO:0002181 ... A0QSD4 35357969
    6 7s0s:E (3.05) BS01 rna ? GO:0003735 ... A0QSD1 35357969
    7 7s0s:F (3.05) BS01 rna ? GO:0003735 ... A0QSD2 35357969
    8 7s0s:G (3.05) BS01 rna ? GO:0000049 ... A0QSG1 35357969
    9 7s0s:G (3.05) BS02 rna ? GO:0000049 ... A0QSG1 35357969
    10 7s0s:H (3.05) BS01 rna ? GO:0002181 ... A0QSG4 35357969
    11 7s0s:I (3.05) BS01 rna ? GO:0003735 ... A0R7F6 35357969
    12 7s0s:J (3.05) BS01 rna ? GO:0003735 ... A0QS62 35357969
    13 7s0s:K (3.05) BS01 rna ? GO:0003735 ... A0QS45 35357969
    14 7s0s:L (3.05) BS01 rna ? GO:0003729 ... A0QSP8 35357969
    15 7s0s:M (3.05) BS01 rna ? GO:0003735 ... A0QSF9 35357969
    16 7s0s:N (3.05) BS01 rna ? GO:0003735 ... A0QSG8 35357969
    17 7s0s:O (3.05) BS01 rna ? GO:0000049 ... A0QSD8 35357969
    18 7s0s:O (3.05) BS02 MG ? GO:0000049 ... A0QSD8 35357969
    19 7s0s:P (3.05) BS01 rna ? GO:0003735 ... A0QSL9 35357969
    20 7s0s:Q (3.05) BS01 rna ? GO:0003735 ... A0QSG5 35357969
    21 7s0s:Q (3.05) BS02 rna ? GO:0003735 ... A0QSG5 35357969
    22 7s0s:R (3.05) BS01 rna ? GO:0003735 ... A0QV42 35357969
    23 7s0s:S (3.05) BS01 rna ? GO:0000027 ... A0QYU6 35357969
    24 7s0s:T (3.05) BS01 rna ? GO:0003723 ... A0R151 35357969
    25 7s0s:U (3.05) BS01 rna ? GO:0003735 ... A0QSD6 35357969
    26 7s0s:V (3.05) BS01 rna ? GO:0000027 ... A0QSD3 35357969
    27 7s0s:W (3.05) BS01 rna ? GO:0003723 ... A0QSG0 35357969
    28 7s0s:X (3.05) BS01 rna ? GO:0003735 ... A0R3D2 35357969
    29 7s0s:X (3.05) BS02 rna ? GO:0003735 ... A0R3D2 35357969
    30 7s0s:Y (3.05) BS01 rna ? GO:0003735 ... A0R150 35357969
    31 7s0s:Y (3.05) BS02 rna ? GO:0003735 ... A0R150 35357969
    32 7s0s:Z (3.05) BS01 rna ? GO:0003735 ... A0QV03 35357969
    33 7s0s:Z (3.05) BS02 ZN ? GO:0003735 ... A0QV03 35357969
    34 7s0s:a (3.05) BS01 rna ? GO:0003735 ... A0QSD9 35357969
    35 7s0s:b (3.05) BS01 rna ? GO:0003735 ... A0QSG7 35357969
    36 7s0s:b (3.05) BS02 rna ? GO:0003735 ... A0QSG7 35357969
    37 7s0s:c (3.05) BS01 rna ? GO:0003735 ... A0R3I9 35357969
    38 7s0s:d (3.05) BS01 rna ? GO:0003735 ... A0QS39 35357969
    39 7s0s:d (3.05) BS02 ZN ? GO:0003735 ... A0QS39 35357969
    40 7s0s:e (3.05) BS01 rna ? GO:0003735 ... A0R7K0 35357969
    41 7s0s:f (3.05) BS01 rna ? GO:0003735 ... A0QYU7 35357969
    42 7s0s:g (3.05) BS01 rna ? GO:0003735 ... A0QSL4 35357969
    43 7s0s:g (3.05) BS02 ZN ? GO:0003735 ... A0QSL4 35357969
    44 7s0s:h (3.05) BS01 rna ? GO:0003735 ... A0R215 35357969
    45 7s0s:h (3.05) BS02 ZN ? GO:0003735 ... A0R215 35357969
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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