Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 54 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ryh:0 (2.43) BS01 rna ? GO:0003735 ... A0A7U4DFF9 35100868
    2 7ryh:1 (2.43) BS01 rna ? GO:0003735 ... N/A 35100868
    3 7ryh:2 (2.43) BS01 rna ? GO:0003735 ... B7I693 35100868
    4 7ryh:3 (2.43) BS01 rna ? GO:0003735 ... B7IA18 35100868
    5 7ryh:3 (2.43) BS02 ZN ? GO:0003735 ... B7IA18 35100868
    6 7ryh:C (2.43) BS01 rna ? GO:0002181 ... B7IA36 35100868
    7 7ryh:D (2.43) BS01 rna ? GO:0003735 ... B7IA39 35100868
    8 7ryh:E (2.43) BS01 rna ? GO:0003735 ... B7IA38 35100868
    9 7ryh:F (2.43) BS01 rna ? GO:0000049 ... B7IA27 35100868
    10 7ryh:F (2.43) BS02 rna ? GO:0000049 ... B7IA27 35100868
    11 7ryh:G (2.43) BS01 rna ? GO:0002181 ... B7IA24 35100868
    12 7ryh:H (2.43) BS01 rna ? GO:0003735 ... B7IBC3 35100868
    13 7ryh:I (2.43) BS01 rna ? GO:0003729 ... B7I9B0 35100868
    14 7ryh:J (2.43) BS01 rna ? GO:0003735 ... N8SHC6 35100868
    15 7ryh:J (2.43) BS02 rna ? GO:0003735 ... N8SHC6 35100868
    16 7ryh:K (2.43) BS01 rna ? GO:0003735 ... B7IA20 35100868
    17 7ryh:L (2.43) BS01 rna ? GO:0000049 ... B7IA32 35100868
    18 7ryh:M (2.43) BS01 rna ? GO:0003735 ... B7IA13 35100868
    19 7ryh:N (2.43) BS01 rna ? GO:0003735 ... B7IA23 35100868
    20 7ryh:N (2.43) BS02 rna ? GO:0003735 ... B7IA23 35100868
    21 7ryh:O (2.43) BS01 rna ? GO:0003735 ... B7IAS9 35100868
    22 7ryh:O (2.43) BS02 rna ? GO:0003735 ... B7IAS9 35100868
    23 7ryh:P (2.43) BS01 rna ? GO:0000027 ... V5VGC9 35100868
    24 7ryh:Q (2.43) BS01 rna ? GO:0003723 ... B7I6V9 35100868
    25 7ryh:R (2.43) BS01 rna ? GO:0003735 ... A0A009I821 35100868
    26 7ryh:S (2.43) BS01 rna ? GO:0000027 ... B7IA37 35100868
    27 7ryh:T (2.43) BS01 rna ? GO:0003723 ... B7IA28 35100868
    28 7ryh:U (2.43) BS01 rna ? GO:0003723 ... B7I7B6 35100868
    29 7ryh:V (2.43) BS01 rna ? GO:0003735 ... B7I6V8 35100868
    30 7ryh:W (2.43) BS01 rna ? GO:0003735 ... N/A 35100868
    31 7ryh:X (2.43) BS01 rna ? GO:0003735 ... B7IA31 35100868
    32 7ryh:Y (2.43) BS01 rna N/A GO:0003735 ... N/A 35100868
    33 7ryh:Z (2.43) BS01 rna ? GO:0003735 ... B7I7A4 35100868
    34 7ryh:b (2.43) BS01 rna ? GO:0003735 ... V5VBC2 35100868
    35 7ryh:c (2.43) BS01 rna ? GO:0003676 ... V5V9N0 35100868
    36 7ryh:d (2.43) BS01 rna ? GO:0003723 ... B7IA15 35100868
    37 7ryh:e (2.43) BS01 rna ? GO:0003723 ... B7IA22 35100868
    38 7ryh:f (2.43) BS01 rna ? GO:0003735 ... B7IBC1 35100868
    39 7ryh:g (2.43) BS01 rna ? GO:0000028 ... B7I7S0 35100868
    40 7ryh:h (2.43) BS01 rna ? GO:0003735 ... B7IA25 35100868
    41 7ryh:i (2.43) BS01 rna ? GO:0003723 ... V5VBA5 35100868
    42 7ryh:j (2.43) BS01 rna N/A GO:0003723 ... N/A 35100868
    43 7ryh:k (2.43) BS01 rna ? GO:0003735 ... A0A4R0F9S8 35100868
    44 7ryh:l (2.43) BS01 rna ? GO:0000049 ... B7I7R9 35100868
    45 7ryh:m (2.43) BS01 rna ? GO:0000049 ... B7IA17 35100868
    46 7ryh:n (2.43) BS01 rna ? GO:0003735 ... B7IA26 35100868
    47 7ryh:o (2.43) BS01 rna ? GO:0003735 ... B7I3U0 35100868
    48 7ryh:o (2.43) BS02 rna ? GO:0003735 ... B7I3U0 35100868
    49 7ryh:p (2.43) BS01 rna ? GO:0003735 ... A0A1V3DIZ9 35100868
    50 7ryh:q (2.43) BS01 rna ? GO:0003735 ... B7IA30 35100868
    51 7ryh:r (2.43) BS01 rna N/A GO:0003735 ... N/A 35100868
    52 7ryh:s (2.43) BS01 rna ? GO:0000028 ... B7IA35 35100868
    53 7ryh:t (2.43) BS01 rna ? GO:0003723 ... B7I5N9 35100868
    54 7ryh:u (2.43) BS01 rna ? GO:0003735 ... A0A0Q7FMS9 35100868
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417