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BioLiP
Download all results in tab-seperated text for 45 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7rs5:A (3.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 N/A
    2 7rs5:B (3.9) BS01 GDP ? GO:0000226 ... P02554 N/A
    3 7rs5:B (3.9) BS02 TA1 ? GO:0000226 ... P02554 N/A
    4 7rs5:C (3.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 N/A
    5 7rs5:D (3.9) BS01 GDP ? GO:0000226 ... P02554 N/A
    6 7rs5:D (3.9) BS02 TA1 ? GO:0000226 ... P02554 N/A
    7 7rs5:E (3.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 N/A
    8 7rs5:F (3.9) BS01 GDP ? GO:0000226 ... P02554 N/A
    9 7rs5:F (3.9) BS02 TA1 ? GO:0000226 ... P02554 N/A
    10 7rs5:G (3.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 N/A
    11 7rs5:H (3.9) BS01 GDP ? GO:0000226 ... P02554 N/A
    12 7rs5:H (3.9) BS02 TA1 ? GO:0000226 ... P02554 N/A
    13 7rs5:I (3.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 N/A
    14 7rs5:J (3.9) BS01 GDP ? GO:0000226 ... P02554 N/A
    15 7rs5:J (3.9) BS02 TA1 ? GO:0000226 ... P02554 N/A
    16 7rs5:K (3.9) BS01 ANP N/A GO:0003777 ... N/A N/A
    17 7rs5:K (3.9) BS02 MG N/A GO:0003777 ... N/A N/A
    18 7rs5:L (3.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 N/A
    19 7rs5:M (3.9) BS01 GDP ? GO:0000226 ... P02554 N/A
    20 7rs5:M (3.9) BS02 TA1 ? GO:0000226 ... P02554 N/A
    21 7rs5:N (3.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 N/A
    22 7rs5:O (3.9) BS01 GDP ? GO:0000226 ... P02554 N/A
    23 7rs5:O (3.9) BS02 TA1 ? GO:0000226 ... P02554 N/A
    24 7rs5:P (3.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 N/A
    25 7rs5:Q (3.9) BS01 GDP ? GO:0000226 ... P02554 N/A
    26 7rs5:Q (3.9) BS02 TA1 ? GO:0000226 ... P02554 N/A
    27 7rs5:R (3.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 N/A
    28 7rs5:S (3.9) BS01 GDP ? GO:0000226 ... P02554 N/A
    29 7rs5:S (3.9) BS02 TA1 ? GO:0000226 ... P02554 N/A
    30 7rs5:a (3.9) BS01 ANP N/A GO:0003777 ... N/A N/A
    31 7rs5:a (3.9) BS02 MG N/A GO:0003777 ... N/A N/A
    32 7rs5:b (3.9) BS01 ANP N/A GO:0003777 ... N/A N/A
    33 7rs5:b (3.9) BS02 MG N/A GO:0003777 ... N/A N/A
    34 7rs5:c (3.9) BS01 ANP N/A GO:0003777 ... N/A N/A
    35 7rs5:c (3.9) BS02 MG N/A GO:0003777 ... N/A N/A
    36 7rs5:d (3.9) BS01 ANP N/A GO:0003777 ... N/A N/A
    37 7rs5:d (3.9) BS02 MG N/A GO:0003777 ... N/A N/A
    38 7rs5:e (3.9) BS01 ANP N/A GO:0003777 ... N/A N/A
    39 7rs5:e (3.9) BS02 MG N/A GO:0003777 ... N/A N/A
    40 7rs5:f (3.9) BS01 ANP N/A GO:0003777 ... N/A N/A
    41 7rs5:f (3.9) BS02 MG N/A GO:0003777 ... N/A N/A
    42 7rs5:g (3.9) BS01 ANP N/A GO:0003777 ... N/A N/A
    43 7rs5:g (3.9) BS02 MG N/A GO:0003777 ... N/A N/A
    44 7rs5:h (3.9) BS01 ANP N/A GO:0003777 ... N/A N/A
    45 7rs5:h (3.9) BS02 MG N/A GO:0003777 ... N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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