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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 237 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7rqe:10 (2.4) BS01 rna ? GO:0003735 ... P60493 35165455
    2 7rqe:10 (2.4) BS02 rna ? GO:0003735 ... P60493 35165455
    3 7rqe:10 (2.4) BS03 MG ? GO:0003735 ... P60493 35165455
    4 7rqe:10 (2.4) BS04 MG ? GO:0003735 ... P60493 35165455
    5 7rqe:10 (2.4) BS05 MG ? GO:0003735 ... P60493 35165455
    6 7rqe:11 (2.4) BS01 rna ? GO:0003735 ... P60494 35165455
    7 7rqe:11 (2.4) BS02 MG ? GO:0003735 ... P60494 35165455
    8 7rqe:12 (2.4) BS01 rna ? GO:0003735 ... Q5SHP6 35165455
    9 7rqe:13 (2.4) BS01 rna ? GO:0003735 ... Q5SHQ6 35165455
    10 7rqe:13 (2.4) BS02 rna ? GO:0003735 ... Q5SHQ6 35165455
    11 7rqe:13 (2.4) BS03 MG ? GO:0003735 ... Q5SHQ6 35165455
    12 7rqe:13 (2.4) BS04 MG ? GO:0003735 ... Q5SHQ6 35165455
    13 7rqe:13 (2.4) BS05 MG ? GO:0003735 ... Q5SHQ6 35165455
    14 7rqe:14 (2.4) BS01 rna ? GO:0003735 ... Q5SJE1 35165455
    15 7rqe:14 (2.4) BS02 ZN ? GO:0003735 ... Q5SJE1 35165455
    16 7rqe:15 (2.4) BS01 rna ? GO:0003735 ... P80339 35165455
    17 7rqe:15 (2.4) BS02 MG ? GO:0003735 ... P80339 35165455
    18 7rqe:15 (2.4) BS03 MG ? GO:0003735 ... P80339 35165455
    19 7rqe:15 (2.4) BS04 MG ? GO:0003735 ... P80339 35165455
    20 7rqe:15 (2.4) BS05 ZN ? GO:0003735 ... P80339 35165455
    21 7rqe:16 (2.4) BS01 rna ? GO:0000049 ... P35871 35165455
    22 7rqe:16 (2.4) BS02 ZN ? GO:0000049 ... P35871 35165455
    23 7rqe:17 (2.4) BS01 rna ? GO:0003735 ... P80340 35165455
    24 7rqe:17 (2.4) BS02 MG ? GO:0003735 ... P80340 35165455
    25 7rqe:17 (2.4) BS03 MG ? GO:0003735 ... P80340 35165455
    26 7rqe:18 (2.4) BS01 rna ? GO:0003735 ... Q5SKU1 35165455
    27 7rqe:18 (2.4) BS02 MG ? GO:0003735 ... Q5SKU1 35165455
    28 7rqe:18 (2.4) BS03 MG ? GO:0003735 ... Q5SKU1 35165455
    29 7rqe:19 (2.4) BS01 rna ? GO:0003735 ... Q5SHR2 35165455
    30 7rqe:19 (2.4) BS02 ZN ? GO:0003735 ... Q5SHR2 35165455
    31 7rqe:1D (2.4) BS01 rna ? GO:0002181 ... P60405 35165455
    32 7rqe:1D (2.4) BS02 rna ? GO:0002181 ... P60405 35165455
    33 7rqe:1D (2.4) BS03 MG ? GO:0002181 ... P60405 35165455
    34 7rqe:1D (2.4) BS04 MG ? GO:0002181 ... P60405 35165455
    35 7rqe:1D (2.4) BS05 MG ? GO:0002181 ... P60405 35165455
    36 7rqe:1D (2.4) BS06 MG ? GO:0002181 ... P60405 35165455
    37 7rqe:1D (2.4) BS07 MG ? GO:0002181 ... P60405 35165455
    38 7rqe:1D (2.4) BS08 MG ? GO:0002181 ... P60405 35165455
    39 7rqe:1D (2.4) BS09 MG ? GO:0002181 ... P60405 35165455
    40 7rqe:1D (2.4) BS10 MG ? GO:0002181 ... P60405 35165455
    41 7rqe:1D (2.4) BS11 MG ? GO:0002181 ... P60405 35165455
    42 7rqe:1D (2.4) BS12 MG ? GO:0002181 ... P60405 35165455
    43 7rqe:1D (2.4) BS13 MG ? GO:0002181 ... P60405 35165455
    44 7rqe:1E (2.4) BS01 rna ? GO:0003735 ... Q5SHN8 35165455
    45 7rqe:1E (2.4) BS02 MG ? GO:0003735 ... Q5SHN8 35165455
    46 7rqe:1E (2.4) BS03 MG ? GO:0003735 ... Q5SHN8 35165455
    47 7rqe:1E (2.4) BS04 MG ? GO:0003735 ... Q5SHN8 35165455
    48 7rqe:1E (2.4) BS05 MG ? GO:0003735 ... Q5SHN8 35165455
    49 7rqe:1F (2.4) BS01 rna ? GO:0003735 ... Q5SHN9 35165455
    50 7rqe:1F (2.4) BS02 MG ? GO:0003735 ... Q5SHN9 35165455
    51 7rqe:1F (2.4) BS03 MG ? GO:0003735 ... Q5SHN9 35165455
    52 7rqe:1F (2.4) BS04 MG ? GO:0003735 ... Q5SHN9 35165455
    53 7rqe:1F (2.4) BS05 MG ? GO:0003735 ... Q5SHN9 35165455
    54 7rqe:1F (2.4) BS06 ARG ? GO:0003735 ... Q5SHN9 35165455
    55 7rqe:1F (2.4) BS07 MG ? GO:0003735 ... Q5SHN9 35165455
    56 7rqe:1F (2.4) BS08 MG ? GO:0003735 ... Q5SHN9 35165455
    57 7rqe:1F (2.4) BS09 MG ? GO:0003735 ... Q5SHN9 35165455
    58 7rqe:1F (2.4) BS10 MG ? GO:0003735 ... Q5SHN9 35165455
    59 7rqe:1F (2.4) BS11 MG ? GO:0003735 ... Q5SHN9 35165455
    60 7rqe:1F (2.4) BS12 MG ? GO:0003735 ... Q5SHN9 35165455
    61 7rqe:1F (2.4) BS13 MG ? GO:0003735 ... Q5SHN9 35165455
    62 7rqe:1G (2.4) BS01 rna ? GO:0000049 ... Q5SHQ0 35165455
    63 7rqe:1G (2.4) BS02 rna ? GO:0000049 ... Q5SHQ0 35165455
    64 7rqe:1G (2.4) BS03 MG ? GO:0000049 ... Q5SHQ0 35165455
    65 7rqe:1G (2.4) BS04 MG ? GO:0000049 ... Q5SHQ0 35165455
    66 7rqe:1H (2.4) BS01 rna ? GO:0002181 ... P0DOY8 35165455
    67 7rqe:1I (2.4) BS01 rna ? GO:0003735 ... Q5SLQ1 35165455
    68 7rqe:1N (2.4) BS01 rna ? GO:0003729 ... P60488 35165455
    69 7rqe:1N (2.4) BS02 MG ? GO:0003729 ... P60488 35165455
    70 7rqe:1N (2.4) BS03 MG ? GO:0003729 ... P60488 35165455
    71 7rqe:1O (2.4) BS01 rna ? GO:0003735 ... Q5SHP8 35165455
    72 7rqe:1O (2.4) BS02 rna ? GO:0003735 ... Q5SHP8 35165455
    73 7rqe:1P (2.4) BS01 rna ? GO:0003735 ... Q5SHQ7 35165455
    74 7rqe:1P (2.4) BS02 MG ? GO:0003735 ... Q5SHQ7 35165455
    75 7rqe:1P (2.4) BS03 MG ? GO:0003735 ... Q5SHQ7 35165455
    76 7rqe:1P (2.4) BS04 MG ? GO:0003735 ... Q5SHQ7 35165455
    77 7rqe:1Q (2.4) BS01 rna ? GO:0000049 ... P60489 35165455
    78 7rqe:1Q (2.4) BS02 rna ? GO:0000049 ... P60489 35165455
    79 7rqe:1Q (2.4) BS03 MG ? GO:0000049 ... P60489 35165455
    80 7rqe:1Q (2.4) BS04 MG ? GO:0000049 ... P60489 35165455
    81 7rqe:1Q (2.4) BS05 MG ? GO:0000049 ... P60489 35165455
    82 7rqe:1Q (2.4) BS06 MG ? GO:0000049 ... P60489 35165455
    83 7rqe:1R (2.4) BS01 rna ? GO:0003735 ... Q9Z9H5 35165455
    84 7rqe:1R (2.4) BS02 MG ? GO:0003735 ... Q9Z9H5 35165455
    85 7rqe:1R (2.4) BS03 MG ? GO:0003735 ... Q9Z9H5 35165455
    86 7rqe:1R (2.4) BS04 MG ? GO:0003735 ... Q9Z9H5 35165455
    87 7rqe:1R (2.4) BS05 MG ? GO:0003735 ... Q9Z9H5 35165455
    88 7rqe:1S (2.4) BS01 rna ? GO:0003735 ... Q5SHQ4 35165455
    89 7rqe:1S (2.4) BS02 rna ? GO:0003735 ... Q5SHQ4 35165455
    90 7rqe:1T (2.4) BS01 rna ? GO:0003735 ... P60490 35165455
    91 7rqe:1T (2.4) BS02 rna ? GO:0003735 ... P60490 35165455
    92 7rqe:1U (2.4) BS01 rna ? GO:0000027 ... P60491 35165455
    93 7rqe:1U (2.4) BS02 MG ? GO:0000027 ... P60491 35165455
    94 7rqe:1U (2.4) BS03 MG ? GO:0000027 ... P60491 35165455
    95 7rqe:1U (2.4) BS04 MG ? GO:0000027 ... P60491 35165455
    96 7rqe:1U (2.4) BS05 MG ? GO:0000027 ... P60491 35165455
    97 7rqe:1U (2.4) BS06 MG ? GO:0000027 ... P60491 35165455
    98 7rqe:1V (2.4) BS01 rna ? GO:0003723 ... P60492 35165455
    99 7rqe:1V (2.4) BS02 MG ? GO:0003723 ... P60492 35165455
    100 7rqe:1V (2.4) BS03 MG ? GO:0003723 ... P60492 35165455
    101 7rqe:1V (2.4) BS04 MG ? GO:0003723 ... P60492 35165455
    102 7rqe:1W (2.4) BS01 rna ? GO:0003735 ... Q5SHP3 35165455
    103 7rqe:1W (2.4) BS02 MG ? GO:0003735 ... Q5SHP3 35165455
    104 7rqe:1W (2.4) BS03 MG ? GO:0003735 ... Q5SHP3 35165455
    105 7rqe:1X (2.4) BS01 rna ? GO:0000027 ... Q5SHP0 35165455
    106 7rqe:1Y (2.4) BS01 rna ? GO:0003723 ... Q5SHP9 35165455
    107 7rqe:1Y (2.4) BS02 ZN ? GO:0003723 ... Q5SHP9 35165455
    108 7rqe:1Z (2.4) BS01 rna ? GO:0003723 ... Q5SHZ1 35165455
    109 7rqe:1Z (2.4) BS02 rna ? GO:0003723 ... Q5SHZ1 35165455
    110 7rqe:1b (2.4) BS01 rna ? GO:0003735 ... P80371 35165455
    111 7rqe:1c (2.4) BS01 rna ? GO:0003676 ... P80372 35165455
    112 7rqe:1d (2.4) BS01 rna ? GO:0003723 ... P80373 35165455
    113 7rqe:1d (2.4) BS02 MG ? GO:0003723 ... P80373 35165455
    114 7rqe:1d (2.4) BS03 MG ? GO:0003723 ... P80373 35165455
    115 7rqe:1d (2.4) BS04 SF4 ? GO:0003723 ... P80373 35165455
    116 7rqe:1e (2.4) BS01 rna ? GO:0003723 ... Q5SHQ5 35165455
    117 7rqe:1f (2.4) BS01 rna ? GO:0003735 ... Q5SLP8 35165455
    118 7rqe:1g (2.4) BS01 rna ? GO:0000028 ... P17291 35165455
    119 7rqe:1h (2.4) BS01 rna ? GO:0003735 ... P0DOY9 35165455
    120 7rqe:1i (2.4) BS01 rna ? GO:0000049 ... P80374 35165455
    121 7rqe:1j (2.4) BS01 rna ? GO:0000049 ... Q5SHN7 35165455
    122 7rqe:1k (2.4) BS01 rna ? GO:0003735 ... P80376 35165455
    123 7rqe:1k (2.4) BS02 MG ? GO:0003735 ... P80376 35165455
    124 7rqe:1l (2.4) BS01 rna ? GO:0000049 ... Q5SHN3 35165455
    125 7rqe:1l (2.4) BS02 MG ? GO:0000049 ... Q5SHN3 35165455
    126 7rqe:1m (2.4) BS01 rna ? GO:0000049 ... P80377 35165455
    127 7rqe:1m (2.4) BS02 rna ? GO:0000049 ... P80377 35165455
    128 7rqe:1m (2.4) BS03 MG ? GO:0000049 ... P80377 35165455
    129 7rqe:1n (2.4) BS01 rna ? GO:0003735 ... P0DOY6 35165455
    130 7rqe:1n (2.4) BS02 MG ? GO:0003735 ... P0DOY6 35165455
    131 7rqe:1n (2.4) BS03 ZN ? GO:0003735 ... P0DOY6 35165455
    132 7rqe:1o (2.4) BS01 rna ? GO:0003735 ... Q5SJ76 35165455
    133 7rqe:1o (2.4) BS02 rna ? GO:0003735 ... Q5SJ76 35165455
    134 7rqe:1p (2.4) BS01 rna ? GO:0003735 ... Q5SJH3 35165455
    135 7rqe:1q (2.4) BS01 rna ? GO:0003735 ... P0DOY7 35165455
    136 7rqe:1r (2.4) BS01 rna ? GO:0003735 ... Q5SLQ0 35165455
    137 7rqe:1s (2.4) BS01 rna ? GO:0000028 ... Q5SHP2 35165455
    138 7rqe:1t (2.4) BS01 rna ? GO:0003723 ... P80380 35165455
    139 7rqe:1t (2.4) BS02 MG ? GO:0003723 ... P80380 35165455
    140 7rqe:1y (2.4) BS01 rna ? GO:0005515 ... P0AD49 35165455
    141 7rqe:1y (2.4) BS02 MG ? GO:0005515 ... P0AD49 35165455
    142 7rqe:20 (2.4) BS01 rna ? GO:0003735 ... P60493 35165455
    143 7rqe:20 (2.4) BS02 rna ? GO:0003735 ... P60493 35165455
    144 7rqe:20 (2.4) BS03 MG ? GO:0003735 ... P60493 35165455
    145 7rqe:21 (2.4) BS01 rna ? GO:0003735 ... P60494 35165455
    146 7rqe:22 (2.4) BS01 rna ? GO:0003735 ... Q5SHP6 35165455
    147 7rqe:23 (2.4) BS01 rna ? GO:0003735 ... Q5SHQ6 35165455
    148 7rqe:23 (2.4) BS02 rna ? GO:0003735 ... Q5SHQ6 35165455
    149 7rqe:23 (2.4) BS03 MG ? GO:0003735 ... Q5SHQ6 35165455
    150 7rqe:24 (2.4) BS01 rna ? GO:0003735 ... Q5SJE1 35165455
    151 7rqe:24 (2.4) BS02 ZN ? GO:0003735 ... Q5SJE1 35165455
    152 7rqe:25 (2.4) BS01 rna ? GO:0003735 ... P80339 35165455
    153 7rqe:25 (2.4) BS02 MG ? GO:0003735 ... P80339 35165455
    154 7rqe:25 (2.4) BS03 MG ? GO:0003735 ... P80339 35165455
    155 7rqe:25 (2.4) BS04 ZN ? GO:0003735 ... P80339 35165455
    156 7rqe:26 (2.4) BS01 rna ? GO:0000049 ... P35871 35165455
    157 7rqe:26 (2.4) BS02 MG ? GO:0000049 ... P35871 35165455
    158 7rqe:26 (2.4) BS03 ZN ? GO:0000049 ... P35871 35165455
    159 7rqe:27 (2.4) BS01 rna ? GO:0003735 ... P80340 35165455
    160 7rqe:27 (2.4) BS02 MG ? GO:0003735 ... P80340 35165455
    161 7rqe:28 (2.4) BS01 rna ? GO:0003735 ... Q5SKU1 35165455
    162 7rqe:29 (2.4) BS01 rna ? GO:0003735 ... Q5SHR2 35165455
    163 7rqe:29 (2.4) BS02 ZN ? GO:0003735 ... Q5SHR2 35165455
    164 7rqe:2D (2.4) BS01 rna ? GO:0002181 ... P60405 35165455
    165 7rqe:2D (2.4) BS02 rna ? GO:0002181 ... P60405 35165455
    166 7rqe:2D (2.4) BS03 MG ? GO:0002181 ... P60405 35165455
    167 7rqe:2D (2.4) BS04 MG ? GO:0002181 ... P60405 35165455
    168 7rqe:2D (2.4) BS05 MG ? GO:0002181 ... P60405 35165455
    169 7rqe:2D (2.4) BS06 MG ? GO:0002181 ... P60405 35165455
    170 7rqe:2D (2.4) BS07 MG ? GO:0002181 ... P60405 35165455
    171 7rqe:2D (2.4) BS08 MG ? GO:0002181 ... P60405 35165455
    172 7rqe:2E (2.4) BS01 rna ? GO:0003735 ... Q5SHN8 35165455
    173 7rqe:2E (2.4) BS02 MG ? GO:0003735 ... Q5SHN8 35165455
    174 7rqe:2E (2.4) BS03 MG ? GO:0003735 ... Q5SHN8 35165455
    175 7rqe:2F (2.4) BS01 rna ? GO:0003735 ... Q5SHN9 35165455
    176 7rqe:2F (2.4) BS02 MG ? GO:0003735 ... Q5SHN9 35165455
    177 7rqe:2F (2.4) BS03 MG ? GO:0003735 ... Q5SHN9 35165455
    178 7rqe:2F (2.4) BS04 MG ? GO:0003735 ... Q5SHN9 35165455
    179 7rqe:2F (2.4) BS05 MG ? GO:0003735 ... Q5SHN9 35165455
    180 7rqe:2G (2.4) BS01 rna ? GO:0000049 ... Q5SHQ0 35165455
    181 7rqe:2G (2.4) BS02 rna ? GO:0000049 ... Q5SHQ0 35165455
    182 7rqe:2H (2.4) BS01 rna ? GO:0002181 ... P0DOY8 35165455
    183 7rqe:2I (2.4) BS01 rna ? GO:0003735 ... Q5SLQ1 35165455
    184 7rqe:2N (2.4) BS01 rna ? GO:0003729 ... P60488 35165455
    185 7rqe:2O (2.4) BS01 rna ? GO:0003735 ... Q5SHP8 35165455
    186 7rqe:2O (2.4) BS02 rna ? GO:0003735 ... Q5SHP8 35165455
    187 7rqe:2P (2.4) BS01 rna ? GO:0003735 ... Q5SHQ7 35165455
    188 7rqe:2Q (2.4) BS01 rna ? GO:0000049 ... P60489 35165455
    189 7rqe:2Q (2.4) BS02 rna ? GO:0000049 ... P60489 35165455
    190 7rqe:2Q (2.4) BS03 MG ? GO:0000049 ... P60489 35165455
    191 7rqe:2Q (2.4) BS04 MG ? GO:0000049 ... P60489 35165455
    192 7rqe:2R (2.4) BS01 rna ? GO:0003735 ... Q9Z9H5 35165455
    193 7rqe:2R (2.4) BS02 MG ? GO:0003735 ... Q9Z9H5 35165455
    194 7rqe:2S (2.4) BS01 rna ? GO:0003735 ... Q5SHQ4 35165455
    195 7rqe:2S (2.4) BS02 rna ? GO:0003735 ... Q5SHQ4 35165455
    196 7rqe:2T (2.4) BS01 rna ? GO:0003735 ... P60490 35165455
    197 7rqe:2T (2.4) BS02 rna ? GO:0003735 ... P60490 35165455
    198 7rqe:2U (2.4) BS01 rna ? GO:0000027 ... P60491 35165455
    199 7rqe:2U (2.4) BS02 MG ? GO:0000027 ... P60491 35165455
    200 7rqe:2V (2.4) BS01 rna ? GO:0003723 ... P60492 35165455
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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