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BioLiP
Download all results in tab-seperated text for 84 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7rmk:A (6.6) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    2 7rmk:A (6.6) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    3 7rmk:A (6.6) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    4 7rmk:B (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5 7rmk:B (6.6) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    6 7rmk:B (6.6) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    7 7rmk:C (6.6) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    8 7rmk:C (6.6) BS02 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    9 7rmk:C (6.6) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    10 7rmk:D (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    11 7rmk:D (6.6) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    12 7rmk:D (6.6) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    13 7rmk:E (6.6) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    14 7rmk:E (6.6) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    15 7rmk:E (6.6) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    16 7rmk:F (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    17 7rmk:F (6.6) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    18 7rmk:F (6.6) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    19 7rmk:G (6.6) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    20 7rmk:G (6.6) BS02 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    21 7rmk:G (6.6) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    22 7rmk:H (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    23 7rmk:H (6.6) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    24 7rmk:H (6.6) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    25 7rmk:I (6.6) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    26 7rmk:I (6.6) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    27 7rmk:I (6.6) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    28 7rmk:J (6.6) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    29 7rmk:J (6.6) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    30 7rmk:J (6.6) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    31 7rmk:K (6.6) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    32 7rmk:K (6.6) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    33 7rmk:K (6.6) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    34 7rmk:L (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    35 7rmk:L (6.6) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    36 7rmk:L (6.6) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    37 7rmk:M (6.6) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    38 7rmk:M (6.6) BS02 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    39 7rmk:M (6.6) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    40 7rmk:N (6.6) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    41 7rmk:N (6.6) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    42 7rmk:N (6.6) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    43 7rmk:O (6.6) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    44 7rmk:O (6.6) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    45 7rmk:O (6.6) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    46 7rmk:P (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    47 7rmk:P (6.6) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    48 7rmk:P (6.6) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    49 7rmk:Q (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    50 7rmk:Q (6.6) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    51 7rmk:Q (6.6) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    52 7rmk:R (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    53 7rmk:R (6.6) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    54 7rmk:R (6.6) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    55 7rmk:S (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    56 7rmk:S (6.6) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    57 7rmk:S (6.6) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    58 7rmk:T (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    59 7rmk:T (6.6) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    60 7rmk:T (6.6) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    61 7rmk:U (6.6) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    62 7rmk:U (6.6) BS02 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    63 7rmk:U (6.6) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    64 7rmk:V (6.6) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    65 7rmk:V (6.6) BS02 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    66 7rmk:V (6.6) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    67 7rmk:W (6.6) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    68 7rmk:W (6.6) BS02 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    69 7rmk:W (6.6) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    70 7rmk:X (6.6) BS01 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    71 7rmk:X (6.6) BS02 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    72 7rmk:X (6.6) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    73 7rmk:Y (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    74 7rmk:Y (6.6) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    75 7rmk:Y (6.6) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    76 7rmk:Z (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    77 7rmk:Z (6.6) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    78 7rmk:Z (6.6) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    79 7rmk:a (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    80 7rmk:a (6.6) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    81 7rmk:a (6.6) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    82 7rmk:b (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    83 7rmk:b (6.6) BS02 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    84 7rmk:b (6.6) BS03 UTP 6.3.4.2 GO:0003883 ... N/A 34734801
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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